BAC Information

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BAC

Clone NameMSMg01-525I22
Chromosome4 (Build37)
Map Location 88,483,732 - 88,484,188
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5
Downstream geneIfna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525I22.T7 (MSMg01no525_i22.b1)MSMg01-525I22.TJ (MSMg01no525_i22.g1)
ACCAG595364AG595365
length749752
length of high quality
(start - end)		536 (42 - 577)457 (73 - 529)
definitionCHROMAT_FILE: MSMg01no525_i22.b1 PHD_FILE: MSMg01no525_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:13 2005CHROMAT_FILE: MSMg01no525_i22.g1 PHD_FILE: MSMg01no525_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATAAAATCATTAATTTATCTACACAATATTAGTTCATAAAAGTTCATC
TTTATGTTGATCAGCAGGAAATTTACTAAATAGGATGCTTTGATGCCCAG
GAATTGTTAGACTGTGTAATAGTGATAGGACAGGCATATAAATAGCAAGA
AGCAATACTGGGGTGAAATCTTTCAGGGCCTTGCCTCTCAGAGCTCACTC
ATCATAAAACATGCAAAAACCAGTGGGCTGTGGGAAGCCACATATGCCAT
TACAAGGTGGCGCTGGCTACCGCTGGCCACCACGCATAAGTTTGGGAAAA
CAACCAATGTGTACATATGCAGTAAAGTTTTTTGCCAAGTCACTGCCTGG
CCCGGGCATAATAATGAGGTTCTGTGAGGTACTGAGAGTATAACCAATCG
GATGTGAGACATGCAAATGAGGTATGATAATGAGGTTCTGTGAGGTTCTT
AGAGCATAACCAATCGGATGTAAGACATGCAAATGAGGTAGTAAATGCAT
AACCAATCCAGGTGTGAGACACGCCTCTCCTAGGCCTATATAAGCAGCAC
CAGTTCTGGGCTCATGGTCTTTTCGCCTCTGCAATCAAGCTCTCCCAATA
AACATGTGCAGAANGATCCTGTTGTGTTGTCATTCTTGCTGGCAAGTTGG
CGCTCATAATGGGCCATCTCCAGGAGACTCATCCACTAGCATTCCTTTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGATTAATCTTCAGGGCCCAATGTGT
TTAATGGTATAGTCGTTCAGTTACTTGTAACAGACAGAATGGCTTTCAGT
GCCTCAACTGTCTGTACTTTCCCATTTACTTTTTCTTCTATCATGAGGTG
TTGGTTTGATCGCCAAAATCTCCAATTCTGTTCTATTTCTCTCCTCTACT
TTCCGAGAAAGAAAACCCTGATATTGGTTTGAAGCACAGAACCAAAATAT
GACGTTATTGGAAGTGAAAGCTGAACAATGAACTGACTTGTCATCTAACA
CAAAGACAAAGTAGTAGCAATAATGTTAGGTACTAAGATAATAAGGACAA
GATCTATGGCCATTAACAATATAATGTTATGAAAGTGACTATGTTTTCAC
TTGATCTTCAGTGTCAATGCAATCCATGTAAAATTTTCAGAAATATTTTG
CTCAGAACTATCATATTTAAAAAATGTGAAGCCATCACGATAACAATGAA
TAAAGAAGTGTTGTATTTATGCTGTCACAATACCTGATTTGAAATTAGAA
CTTGCATTATAGAGAAGGTTCCTGCAGAGGCCAATGGTTACAACAGAAAA
CTCTAGCCGTCCATTCCAGTGAACAGAGAGACTCTCAACTGGTCACTAGG
CAGGGAATAAAGGGCTGATTTCCTTGTCTCAGGGATCCTTTGAAAGGGAG
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_i22.g1 MSMg01no525_i22.g1 CHROMAT_FILE:
MSMg01no525_i22.g1 PHD_FILE: MSMg01no525_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:13 2005
         (457 letters)



>mm_chr4_88483532_88484388
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgattaatcttcagggcccaatgtgtttaatggtatagtcgttcagttacttgtaaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 657 agtgattaatcttcagggcccaatgtgtttaatggtatagtcgttcagctacttgtaaca 598

                                                                       
Query: 61  gacagaatggctttcagtgcctcaactgtctgtactttcccatttactttttcttctatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gacagaatggctttcagtgcctcaactgtctgtactttcccatttactttttcttctatc 538

                                                                       
Query: 121 atgaggtgttggtttgatcgccaaaatctccaattctgttctatttctctcctctacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgaggtgttggtttgatcgccaaaatctccaattctgttctatttctctcctctacttt 478

                                                                       
Query: 181 ccgagaaagaaaaccctgatattggtttgaagcacagaaccaaaatatgacgttattgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccgagaaagaaaaccctgatattggtttgaagcacagaaccaaaatatgacgttattgga 418

                                                                       
Query: 241 agtgaaagctgaacaatgaactgacttgtcatctaacacaaagacaaagtagtagcaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agtgaaagctgaacaatgaactgacttgtcatctaacacaaagacaaagtagtagcaata 358

                                                                       
Query: 301 atgttaggtactaagataataaggacaagatctatggccattaacaatataatgttatga 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 357 atgttaggtactaagataataaggacaagatctatggccattagcaatataatgttatga 298

                                                                       
Query: 361 aagtgactatgttttcacttgatcttcagtgtcaatgcaatccatgtaaaattttcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aagtgactatgttttcacttgatcttcagtgtcaatgcaatccatgtaaaattttcagaa 238

                                                
Query: 421 atattttgctcagaactatcatatttaaaaaatgtga 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 atattttgctcagaactatcatatttaaaaaatgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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