Query= MSMg01no525_k20.b1 MSMg01no525_k20.b1 CHROMAT_FILE:
MSMg01no525_k20.b1 PHD_FILE: MSMg01no525_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:22 2005
(570 letters)
>mm_chr4_98734163_98735132
Length = 970
Score = 1021 bits (528), Expect = 0.0
Identities = 555/566 (98%), Gaps = 4/566 (0%)
Strand = Plus / Plus
Query: 5 gaattcaattcatatcaatcacatggttgctcacaaccaccaataatgagatctgacact 64
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcaattcatagcaaccacatggttgctcacaaccaccaataatgagatctgacact 268
Query: 65 ctcttctgggctgcaggcatacatgcagacagaatgctgtattcataagaaattaaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctcttctgggctgcaggcatacatgcagacagaatgctgtattcataagaaattaaaaaa 328
Query: 125 tcttaaaaacaaaaaagaaatgataatgatatattgaacctatatatcaaatggtcaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcttaaaaacaaaaaagaaatgataatgatatattgaacctatatatcaaatggtcaaat 388
Query: 185 ggtattcttcttcttgggaagagagaggtggaagggaaagagagagaaaaagagggagag 244
||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct: 389 ggtattcttcttcttgggaagagaggggtagaaggga----gagagaaaaagagggagag 444
Query: 245 agagggagagatcatgactagagaaaatctccaaaattaattctctttaaaatgtaacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagggagagatcatgactagagaaaatctccaaaattaattctctttaaaatgtaacag 504
Query: 305 cagaggtttgaaatggcatgtatatgtgtatgtatacatacacatacattagcttatatt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 cagaggtttgaaatggcatgtatatgtgtatgtatacatacacatacattagcttatact 564
Query: 365 ttatgaattataatatttatctatttttcactaaataatctcacatttgttacataacat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttatgaattataatatttatctatttttcactaaataatctcacatttgttacataacat 624
Query: 425 aatttttcaaattatgatattgcatcgttcaagtttagcatgatctaattatttctttat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatttttcaaattatgatattgcatcgttcaagtttagcatgatctaattatttctttat 684
Query: 485 acggaatacttacattcagtattttttattcctaatctcaaagggcacttattcccatta 544
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 acggaatacttatattcagtattttttattcctaatctcaaaaggcacttattcccatta 744
Query: 545 tgacaactaaatcatttcatttccca 570
||||||||||||||||||||||||||
Sbjct: 745 tgacaactaaatcatttcatttccca 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_k20.g1 MSMg01no525_k20.g1 CHROMAT_FILE:
MSMg01no525_k20.g1 PHD_FILE: MSMg01no525_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:22 2005
(529 letters)
>mm_chr4_98823441_98824369
Length = 929
Score = 861 bits (445), Expect = 0.0
Identities = 470/483 (97%), Gaps = 8/483 (1%)
Strand = Plus / Minus
Query: 46 tgaagaggactggcacatggtacctgagcagaggtaagcagccacatagccacatggcag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 tgaagaggactggcacatggtacctgagcagaggtaagcagccacatagccacatggcag 870
Query: 106 aacgtagattagtataaatggcttattttaaactattagttagccagggaacgaccctag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 aacgtagattagtataaatggcttattttaaactattagttagccagggaacgaccctag 810
Query: 166 ctatatggtataggtatttgtaagtatattttgagtctgagttcttctggggaacttggg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctatatggtataggtatttgtaagtatattttgagtctgagttcttctggggaacttggg 750
Query: 226 gctaggatgaaaaacagcccatcatacaactgggaatggatataaataaataagtaaata 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gctaggatgaaaaacagcccatcatacaactgggaatggatataaataaataagtaaata 690
Query: 286 aataaatcaataatcatgcatgatagagttactgtaaaaataatcgctttattaaagggg 345
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 689 aataaatcaataatcatgcatgatagagttactgtaaaaataatcactttattaaagggg 630
Query: 346 agctagggtctgaagtatgtagtatgtaacatttactcaactgaggaaaacactcatgcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agctagggtctgaagtatgtagtatgtaacatttactcaactgaggaaaacactcatgcc 570
Query: 406 tactaatcagctatagaaagcgctcctatgaatcttgatttacacattgcggtggcttga 465
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 569 tactaatcagctatagaaagcgctcctgtgaatcttgatttacacattgccgtggcttga 510
Query: 466 ctgagatgcacgcgcgcgcgcgcacacacacacacacacacacacacacacacacacacg 525
||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctgagatgcacacac--------acacacacacacacacacacacacacacacacacacg 458
Query: 526 ttt 528
|||
Sbjct: 457 ttt 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
