XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGG
TGGGGAGAAGAAAGTCATTTCCCTTTGGTGTGACAGAGCCAGCAAAGACT
CCACATCAGGGAAATACATGAACTGAACTGCTGACACAGCAACTTTTTTA
TGGTAGTCATGGTAATTGCAAGATTCATATCATCAGTGAGGAGCTGACTA
TAGGTGGATGAATGTATGAATAGTATGGAGTTAGCTTATGGGCTACAACG
GCCTTGATTTTTACCAAAACAAAGGAGCAGACTCAATCTGAAAACAGCAG
TGCCTAGAATCTGAGCTAGAATAATCAGATTGACACTTCTCAGCATTATG
GTACTGGCAAAGCAACTGTCCTTGACGCTGCTTCCTTATCCATGAACTAA
AGATGTAATTGTTCCTAAGTGTACCTTGCATCACTGGGTGGTTTGTGGTA
GAAATTAGTTAACACATGTAAAGGTATTAGACTAGTACTCGACACATGGC
AAATGATAACAGTTTGCTTTAAATGTGAGTGAAGAATCGCTAAACTTAGT
GTAGGAAGAACGTTTTTTTTTTTTCATGCTGATGGAAGAACCCTTAACAT
GAAATGAATTGAAGAAGGGAGAAAAAAAATCAGACATAATTACTCTCACT
CTATATCAACATATAGAGGGTAGAATGCCATTGTTTTCCTATTTTATGTT
TTTGTTTTAATTATTTATATTATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGAAATTGTGTAGAGGTATTTCAGGTTCACTGAT
GTTTAAATTTATTAATGATATATGATGTGAATAATTTTTAAATATATTTA
TTTGCCATCTGTATGTCTTCTGAGTTGAGTTGTCTCTTATTGTAGTTGGT
CTATTTATAAATATTTATTTGTTGTATGTGTCTAGAGTATATGCACACTT
TTATGTACAGGCATATATATTTGTCACTTGAAGAGTATAAACTTCATTTT
TACCAAGTGTAGCTCATCAATTCTTTCTTTCATGGAACATAATGTGGGTA
TTTGTCTTTGCCCATTTCATGATAATATAACAGAATATTGTAATGTGTAT
TTTTAAAATATTAGAAATATATTGATTATAATTCTGGTGACAGAATATCA
AGATTCTGGGTTCCTAGAAGAATATTTTGCTATGACACATAATTTAATCA
AGTGTGTTGTGTCTAGCCTGTAGATTGTGATCTACCTGGGTTCTAGCCTG
GAAAGGCATTTTGGAAACCTGGAAGAGAAGAGGGCCTGGGCTGCGCTAGA
TAAGGAAGGAACCAAGACAAAGCTCTCTGCTCAAGGTTCAATTTTTACTA
TTTCGGCACTCAGTTATAAAGGAAGGGGGAGGGGCCCAATTCCTGCCAAA
TAATCTTGGGATTCAGTAGC

Query= MSMg01no526_a16.b1 MSMg01no526_a16.b1 CHROMAT_FILE:
MSMg01no526_a16.b1 PHD_FILE: MSMg01no526_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:51 2005
         (580 letters)



>mm_chr4_96433180_96434158
          Length = 979

 Score = 1065 bits (551), Expect = 0.0
 Identities = 573/587 (97%), Gaps = 12/587 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggtggggagaagaaagtcatttccctttggtgtgacagagccagcaaagact 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggtggg-agaagaaagtcatttccctttggtgtgacagagccagcaaagact 263

                                                                       
Query: 65  ccacatcagggaaatacatgaactgaactgctgacacagcaacttttttatggtagtcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccacatcagggaaatacatgaactgaactgctgacacagcaacttttttatggtagtcat 323

                                                                       
Query: 125 ggtaattgcaagattcatatcatcagtgaggagctgactataggtggatgaatgtatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtaattgcaagattcatatcatcagtgaggagctgactataggtggatgaatgtatgaa 383

                                                                       
Query: 185 tagtatggagttagcttatgggctacaacggccttgatttttaccaaaacaaaggagcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagtatggagttagcttatgggctacaacggccttgatttttaccaaaacaaaggagcag 443

                                                                       
Query: 245 actcaatctgaaaacagcagtgcctagaatctgagctagaataatcagattgacacttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actcaatctgaaaacagcagtgcctagaatctgagctagaataatcagattgacacttct 503

                                                                       
Query: 305 cagcattatggtactggcaaagcaactgtccttgacgctgcttccttatccatgaactaa 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 cagcattatggtactggcaaagcaactgtccttgactctgcttccttatccatgaactaa 563

                                                                       
Query: 365 agatgtaattgttcctaagtgtaccttgcatcactgggtggtttgtggtagaaattagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agatgtaattgttcctaagtgtaccttgcatcactgggtggtttgtggtagaaattagtt 623

                                                                       
Query: 425 aacacatgtaaaggtattagactagtactcgacacatggcaaatgataacagtttgcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacacatgtaaaggtattagactagtactcgacacatggcaaatgataacagtttgcttt 683

                                                                       
Query: 485 aaatgtgagtgaagaatcgctaaacttagtgtaggaagaacgtttttttttttt------ 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 684 aaatgtgagtgaagaatcgctaaacttagtgtaggaagaacgtttttttttttttttttt 743

                                                          
Query: 539 -----catgctgatggaagaacccttaacatgaaatgaattgaagaa 580
                |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 744 tttttcatgctgatggaagaacccttaacatgaaatgaactgaagaa 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)