Query= MSMg01no526_h17.b1 MSMg01no526_h17.b1 CHROMAT_FILE:
MSMg01no526_h17.b1 PHD_FILE: MSMg01no526_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:25 2005
(706 letters)
>mm_chr4_74970824_74971929
Length = 1106
Score = 1266 bits (655), Expect = 0.0
Identities = 695/715 (97%), Gaps = 12/715 (1%)
Strand = Plus / Minus
Query: 4 ggaattccctgaattatgaaaagtccaag----tttttttttaagaaaaaagaaaagaaa 59
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1021 ggaattccctgaattatgaaaagtccaagtttttttttttttaagaaaaaagaaaagaaa 962
Query: 60 atcag--------cacacacacacacacacacacacacacacacacacacacacattact 111
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 atcagcacacacacacacacacacacacacacacacacacacacacacacacacattact 902
Query: 112 caactactaaatccaccagcaacagtttgaacacagtgcttctgaagtattctcacccct 171
||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct: 901 caactactaaatccaccagcaacagtttggacacggtgcttctgaagtactctcacccct 842
Query: 172 cccaaccaggcacaagctgcatcaaggagagggataacttctccacctctgctcaggcat 231
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 841 cccaaccaggcacaagctgcatcaagaagagggataacttctccacctctgctcaggcat 782
Query: 232 cagaaaatagatgggggtcattattgctgagctccagcagcagctggaacatgtatccca 291
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cagaaaatagatggaggtcattattgctgagctccagcagcagctggaacatgtatccca 722
Query: 292 agtgagttgagagcagcactcactggtgagccttccagaggtctaagaggtggtgaaagg 351
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 721 agtgagttgagagcagcactcaccggtgagccttccagaggtctaagaggtggtgaaagg 662
Query: 352 gttggcactgaagaaatccctgatatcatattcaccctgctgacaggtgtgatgcctcct 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gttggcactgaagaaatccctgatatcatattcaccctgctgacaggtgtgatgcctcct 602
Query: 412 gcaatgctagtggaactcattcatgccttatccttcacaacagagtagaagtacgggtgt 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gccatgctagtggaactcattcatgccttatccttcacaacagagtagaagtacgggtgt 542
Query: 472 tccatgacctctcttccagcgagctgtaactggtggtcttattgcagcagcttgtacaca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccatgacctctcttccagcgagctgtaactggtggtcttattgcagcagcttgtacaca 482
Query: 532 aaatccaaggcctcggggcttacaagatgctggttttcactgtggacaaagaattcccat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatccaaggcctcggggcttacaagatgctggttttcactgtggacaaagaattcccat 422
Query: 592 cacttctgggagtgtctgcccaagatattgttgaaacatggatctaattcaatattgtac 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cacttctgggagtgtctgcccaagatattgttgaaacatggatctaattcaatattgtac 362
Query: 652 ttgttaatgtagttatacaaatcttctgtccccagaatcttggctatcctcacca 706
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 361 ttgttaatgtagttatacaaatcttctgtccccagaaccttggctatcctcacca 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no526_h17.g1 MSMg01no526_h17.g1 CHROMAT_FILE:
MSMg01no526_h17.g1 PHD_FILE: MSMg01no526_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:25 2005
(643 letters)
>mm_chr4_74885198_74886241
Length = 1044
Score = 1214 bits (628), Expect = 0.0
Identities = 640/644 (99%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 1 tcatattctattgacatgctttctttgggagatgaaagaagccattagtaaaacatttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatattctattgacatgctttctttgggagatgaaagaagccattagtaaaacatttag 260
Query: 61 taaacatattataaccaacaggtacacaaattttagttattcttttaaataataaataac 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacatattataatcaacaggtacacaaattttagttattcttttaaataataaataac 320
Query: 121 aaatacccatcattttttctggagaagggtgtaaaagtagacagtaaatgttgttagata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aaatacccatcattttttctggagaagggtgtaaaagtagacagtaaatgttgttagaca 380
Query: 181 gaggaataagcaactctagacatttactgtagtattggaagtagtgttagcttctagctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaataagcaactctagacatttactgtagtattggaagtagtgttagcttctagctc 440
Query: 241 ctagactaagaagcatcacctaggggcaggaaaaattaaacttagacactcaatttctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagactaagaagcatcacctaggggcaggaaaaattaaacttagacactcaatttctgc 500
Query: 301 ttgcttttaggggaatgagttgtttgtcttatttaatactgactactattctgatctctc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ttgcttttaggggaatgagttgtttgtcttatttaatactgactactattctgatcgctc 560
Query: 361 cagaaaatgattagttggacatagaataagaattgaatagagctggaaaaacagctgtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaaatgattagttggacatagaataagaattgaatagagctggaaaaacagctgtgt 620
Query: 421 ctgaatggacagagcacatttt-cagctcttgctgattcaattttttcagcagattttta 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaatggacagagcacatttttcagctcttgctgattcaattttttcagcagattttta 680
Query: 480 ttaaagagaaccaccccataatgcaaagctatagagtaacataaatacaaatcatgaaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaagagaaccaccccataatgcaaagctatagagtaacataaatacaaatcatgaaat 740
Query: 540 ttatgaccattataagtgttgattaatggctttccaattctgggaaattccataatgagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatgaccattataagtgttgattaatggctttccaattctgggaaattccataatgagc 800
Query: 600 tacttacagtttttctagtagaaacatgaaagtaacaaaaatgt 643
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacttacagtttttctagtagaaacatgaaagtaacaaaaatgt 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
