XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
CAAAGATATAATATACTAAGTATGTTATAAACCTTAAGATCCATTCATTT
TTTTTATAAGTTTATCTATTGCTGCCAAGCACACAATATATGAGCTATGA
TCTACATTCATTCTAGAAGCTTAAAAATAGTTTTAACTTTATAGGCGTCT
TTACCCAAAGCAGAAATGTTTGTTCAACTCTCTGTGTGACATTATACTAA
ATGAGCAGCAGCACCTTCCAACCGTTAGAGCCATGCTAACTTATCTACTT
CTTTACATGTTTGTTTTTATTTGAATTTTAAACAAATAACTATAGTTTCC
TCTTTTCTCCTTTTATTATTTAGTAATCTTTTAAAATACATTCCTTATAT
CTAAAAACAATATTTTCCTCAATATACTAAGTAAAATTGGGCATTATTTT
GTTATATTGCATGTAGTTAGTTGCATTTTTAACCTACAGTGCCCTATTAG
TTTTGCCCATATGTACATGGTTATAGGGTCATGCATTGGAATATGAGCTA
TCTGTTACTGGCAGCCAACACCCAAAGGAAAGTAACTGTCTTAGATAGGA
ACTATGAACTCCAATAGCTGTGCAGCTAAAGATGGGGACTTGGCAGGGCT
TTACACCCAAGCAAGAATTTTTACATGGATTGAACTCGTTCAGGGCTACA
TATTTTTAGTAAAGAGCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTATGAAGATGAGAATGAATGCAGAGACCC
ACAATCAGACAATATACAGAGGGCAAGAAACACTGGAACACTCAGCCCTA
AAGGAGATCTCTTCATCAAATTCACTCACTCCTGCTCCTTGCTCATGGCT
TAGAGTAATATGGAACAGGTGTAAGCTAGAGCAAGAGGAGATGGTGGACA
CCAAGGAAACAAGACTCTCCAAATCAACTTTATTTCTGCACATATGAATT
CACAGAGATGGCAGCACTGCATACGAGCTCTGTATGTGTCTGCACCAGAT
GGGGTACAAGGGGTGAAAGAAAAAGTGGATAAATGCCCCATTCCTTCCCT
GAAGCTATTTCCAAAGGATAAACACATTCAAATGAAAATTTAGCTTTCTC
CAAGGTGTTCAAACTTGAGAAATAAACTACTCTTAAGAGTAGAATATAAA
CCAAACAGTTCATGGACTAAAGAAAATTTACTCAATGTCTTCTTTGGACA
TTCCTTATGTCATAATGTCATACCAGGATTTTTCCTTCCTTTTTAAATTT
ACTATAATTTCTATTTTGCAATACATATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATATATATATATAT
GTATATATGTGTGTGTATAGTTTGAAT

Query= MSMg01no526_k16.b1 MSMg01no526_k16.b1 CHROMAT_FILE:
MSMg01no526_k16.b1 PHD_FILE: MSMg01no526_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:39 2005
         (680 letters)



>mm_chr4_77552777_77553854
          Length = 1078

 Score = 1205 bits (623), Expect = 0.0
 Identities = 633/637 (99%), Gaps = 2/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccaaagatataatatactaagtatgttataaaccttaagatccattcattttt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaattcaccaaagaaataatatactaagtatgttataaaccttaagatccattcattttt 576

                                                                       
Query: 65  tttataagtttatctattgctgccaagcacacaatatatgagctatgatctacattcatt 124
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttat--gtttatctattgctgccaagcacacaatatatgagctatgatctacattcatt 518

                                                                       
Query: 125 ctagaagcttaaaaatagttttaactttataggcgtctttacccaaagcagaaatgtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctagaagcttaaaaatagttttaactttataggcgtctttacccaaagcagaaatgtttg 458

                                                                       
Query: 185 ttcaactctctgtgtgacattatactaaatgagcagcagcaccttccaaccgttagagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttcaactctctgtgtgacattatactaaatgagcagcagcaccttccaaccgttagagcc 398

                                                                       
Query: 245 atgctaacttatctacttctttacatgtttgtttttatttgaattttaaacaaataacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atgctaacttatctacttctttacatgtttgtttttatttgaattttaaacaaataacta 338

                                                                       
Query: 305 tagtttcctcttttctccttttattatttagtaatcttttaaaatacattccttatatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tagtttcctcttttctccttttattatttagtaatcttttaaaatacattccttatatct 278

                                                                       
Query: 365 aaaaacaatattttcctcaatatactaagtaaaattgggcattattttgttatattgcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaaaacaatattttcctcaatatactaagtaaaattgggcattattttgttatattgcat 218

                                                                       
Query: 425 gtagttagttgcatttttaacctacagtgccctattagttttgcccatatgtacatggtt 484
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 217 gtagttagttgcatttttaacctagagtgccctattagttttgcccatatgtacatggtt 158

                                                                       
Query: 485 atagggtcatgcattggaatatgagctatctgttactggcagccaacacccaaaggaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atagggtcatgcattggaatatgagctatctgttactggcagccaacacccaaaggaaag 98

                                                                       
Query: 545 taactgtcttagataggaactatgaactccaatagctgtgcagctaaagatggggacttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  taactgtcttagataggaactatgaactccaatagctgtgcagctaaagatggggacttg 38

                                                
Query: 605 gcagggctttacacccaagcaagaatttttacatgga 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  gcagggctttacacccaagcaagaatttttacatgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1078
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1068
Effective search space:   715560
Effective search space used:   715560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)