XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
TTATGTCCTTTAAAATATGCCCTATAGGAAAATTTATGGCTTTGTCCATT
TTTGTCTGTCCAAACCCTTCTGAAGCATAAATCATAAATCAGAGAAAAAC
ATGTACTAACTAAGTAGTAGCTGTTAGGAAAGAGTCAGGGACAGACACCA
ATTCCAAATCACTCTTCAAATGGCCCTGAGGAGTAAATGTGCTCTAAGCT
AATATACAACATAGTTATAAAAGATAGTTAACGTCAAAACATGGATGCTG
GTCCTGTGATGGGCAAAGCTTTAGTAGAGACCAAGACTCGGGTGACCACT
ACTTGTCATCTTTACAGTGCTCAGAGCTAACCGTAGTCACTTTAGACTTT
CACAGTCTAACTCTAGCATGTCAGCAATCCCCCGCTGACCCAACTGAAGT
GGTTGGTTCATTCTGCTTCTACAGGATAGATCGCAACAAGTGAAAGAAAT
GTAAACGCCTCTGTGTCCAGAAAGTAGCAAATTATTTACTTAAACATCAC
CTTTTTAACTCTTTAGGAAAAAAACTTGTCACTCCTCGGAACATGTTCTG
GGAAACAAGTCCTTGTTCTCCCGGCCAGAGTGTGGGAACCTCTTGTAGTT
GATTCTACATCCCAGACAGTACCTTCCTTTTTGAGTCTGGCTTCAGAAAC
CTTCTCCTTTCAGAGTAAGAGTTCTTTGTGTGTTGGTAAAATGTTTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTAATCCACTTAGATTTGACCTTAGTACAAG
GAGATAGGAATGGATCAATTAGCATTCTTCTACGTGATAACTCCCAGTTG
TGCCAGCACCATTTGTTGAAAATGCTGTCATTTTTCCACTGGATGGTTTT
TGCTCCCTTGTCAAAGATCAAGGGACCATAGGTGTGTGGGTTCATTTCTG
GGACTTCAATTGTATTCCATTGGTCTACTTTTATGTTGCTATACCGTTAC
CATGCCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAATTGC
TCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAAAGGTTCTTT
TATCCTTGAAAAGAGTTTTTGCTATCCTCAGTTTTTTGTTATTCCAAATG
AATTTGCAAATTGCTCTTTCTAATTCATTGAAAAATTGAGTTGGAATTTT
GATGGGGATTGCATTGAATCTGAAGATTGCTTTTGGCAAGATAGACATTT
TTACTATATTGATCCTGCCATTCCAAGACCATGGGAGATCTTTCCATCTT
CTGAGATCTTCTTTAAATTCTTTTTTAAGAGACTTGAAGTTCTTATCATA
CAGATCTTTCACTTCCTTAATTAGGGTCTCACCAATGGATTTTATATTAT
TTGTGACTATTGAGAAAGGGGGTATTTCCCTAATTCTTTCTCACCCTGG

Query= MSMg01no526_l20.b1 MSMg01no526_l20.b1 CHROMAT_FILE:
MSMg01no526_l20.b1 PHD_FILE: MSMg01no526_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:45 2005
         (590 letters)



>mm_chr4_35760500_35761490
          Length = 991

 Score = 1060 bits (548), Expect = 0.0
 Identities = 578/588 (98%), Gaps = 3/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-aaattatgtcctttaaaatatgccctataggaaaatttatggctttgtccatt 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattcaaaattatgtcctttaaaatatgccctataggaaaatttatggctttgtccatt 732

                                                                       
Query: 64  tttgtctgtccaaacccttctgaagcataaatcataaatcagagaaaaacatgtactaac 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 731 tttgtctgt-caaacccttctgaagcataaatcataaatcagagaaaaatatgtactaag 673

                                                                       
Query: 124 taagtagtagctgttaggaaagagtcagggacagacaccaattccaaatcactcttcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 taagtagtagctgttaggaaagagtcagggacagacaccaattccaaatcactcttcaaa 613

                                                                       
Query: 184 tggccctgaggagtaaatgtgctctaagctaatatacaacatagttataaaagatagtta 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 612 tggccctgaggagtaaatgtgctctaagctaatatacaacatagttataaaagatattta 553

                                                                       
Query: 244 acgtcaaaacatggatgctggtcctgtgatgggcaaagctttagtagagaccaagactcg 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 552 acgtcaaaacatggatgctggtcctgtgatgggcaaagctttagtagagaccgagactca 493

                                                                       
Query: 304 ggtgaccactacttgtcatctttacagtgctcagagctaaccgtagtcactttagacttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtgaccactacttgtcatctttacagtgctcagagctaaccgtagtcactttagacttt 433

                                                                       
Query: 364 cacagtc-taactctagcatgtcagcaatcccccgctgacccaactgaagtggttggttc 422
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cacagtcttaactccagcatgtcagcaatcccccgctgacccaactgaagtggttggttc 373

                                                                       
Query: 423 attctgcttctacaggatagatcgcaacaagtgaaagaaatgtaaacgcctctgtgtcca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 attctgcttctacaggatagatcgcaacaagtgaaagaaatgtaaacgcctctgtgtcca 313

                                                                       
Query: 483 gaaagtagcaaattatttacttaaacatcacctttttaactctttaggaaaaaaacttgt 542
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 312 gaaagtagcaaattatttacttaaacatcatctttttaactctttaggaaaaaaacttgt 253

                                                           
Query: 543 cactcctcggaacatgttctgggaaacaagtccttgttctcccggcca 590
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cactcctcggaacatgttctgggaaacaagtccttgttctcccggcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)