BAC Information

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BAC

Clone NameMSMg01-526N01
Chromosome4 (Build37)
Map Location 113,695,457 - 113,695,769
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC230622, LOC100040607, LOC242627
Downstream geneLOC100040625, A630098G03Rik, LOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526N01.T7 (MSMg01no526_n01.b1)MSMg01-526N01.TJ (MSMg01no526_n01.g1)
ACCAG596317AG596318
length741800
length of high quality
(start - end)
692 (38 - 729)311 (66 - 376)
definitionCHROMAT_FILE: MSMg01no526_n01.b1 PHD_FILE: MSMg01no526_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:51 2005CHROMAT_FILE: MSMg01no526_n01.g1 PHD_FILE: MSMg01no526_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAAATGTTCAATAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCTGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTGCA
GGCTTTTACAACCACTCTGGAAATCCATCTGGCGGTTCCTCAGAAAATTG
GACATAGTACTACCGGAGGATCCAGCAATACCTCTCTTGGGCATATATCC
AGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTATAAATTCCTAGCCAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCAC
ACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACATAGGATACC
CAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAAAATGAA
GACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAA
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAACATAAACTATCTGCAAAAGAAAAAAAAACCA
TGGCTTTTGTTAGAGCACAATTTCATTGTCATGGGCTGTGAACAATCAGA
ATTATTAATTATTTGGTAGAGTTGGTTCCTCTTGAATGTATGAGCTTCTT
TTCATTCCAGAGCTTTCAGGTTTTCTGAAAATAAATAAATCTATATATCA
TATTCTGTCATGTTACAGGGATCCAGTGACAAGAAGAAGAATAATTATTT
GTAAGAACAACTATCATTTTTTGTTATTTGATGATGATGGTATGTGTGTG
TGAGAGAGAGAGAGGGGGGAGGGGTANAGATNNNNTTNNNTTTTTTTTGT
TTTTTTTTTTTTTTTTGTTTTTTNNTCCTTTTTTTTTTTTTTGTTTTTTT
TTTTTTTTTTATTTTGGTTTTTATATTGTTGTGTGTTGTTTGTTGTTTAG
TTGTTTTTTTATATTTTTGTTTTTTATTATTTTTTATTTATTTATTAGTG
TGTTTTTGTTTCTTTTTATTTTTTTTTTTATATTTTTGTTCCATTAATCG
TTGATTTTTTATGTATCGTTAAAAAACTCCTGTGAATTTACTTTATCCTC
TTTACTCTTGTTTTTTTTCCTATACATTTGTATTTTATTTATATCATATG
TAAACCTTTAATTCCCAGCTCATTTTATTTCCCGATACCACTTACTTTGA
GTTGTTTAATTTTTTCTCTAAATATGTATTGAACTTATACCCTCCTTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_n01.g1 MSMg01no526_n01.g1 CHROMAT_FILE:
MSMg01no526_n01.g1 PHD_FILE: MSMg01no526_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:51 2005
         (311 letters)



>mm_chr4_113695095_113695805
          Length = 711

 Score =  505 bits (261), Expect = e-147
 Identities = 300/315 (95%), Gaps = 8/315 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacataaactatctgca-aaagaaaaaaaaaccatggcttttgttagagcacaatt-- 57
           |||||||||||||||||||  | |||||| ||| ||| ||||||||||||||||||||  
Sbjct: 675 caaacataaactatctgcagcaggaaaaataaa-cat-gcttttgttagagcacaatttg 618

                                                                       
Query: 58  tcattgtcatgggctgtgaacaatcaga---attattaattatttggtagagttggttcc 114
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 617 tcattgtcatgggctgtgaacaatcagaattattattaattatttggtagagttggttcc 558

                                                                       
Query: 115 tcttgaatgtatgagcttcttttcattccagagctttcaggttttctgaaaataaataaa 174
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 tcttgaatgtatgagcttcttttcattccagagctttcaggttttctgaaaacaaataaa 498

                                                                       
Query: 175 tctatatatcatattctgtcatgttacagggatccagtgacaagaagaagaataattatt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctatatatcatattctgtcatgttacagggatccagtgacaagaagaagaataattatt 438

                                                                       
Query: 235 tgtaagaacaactatcattttttgttatttgatgatgatggtatgtgtgtgtgagagaga 294
           ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct: 437 tgtaagaacaactatcattttttgttatttggtggtgatggtatgtgtgtgtgtgagaga 378

                          
Query: 295 gagaggggggagggg 309
           |||||||||||||||
Sbjct: 377 gagaggggggagggg 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)