XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGACAGCCAGGACTACACAGAGAACCCCTGTCGAAAGAAAGAAAGAAAG
GAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAA
AGAGAGAAAGAGAGAAAGAGAGAAAGCGAGAAAAAGAGAAAGAGAGAAAA
AGAGAGAAAGAGAGAAAGAGAGAGAGAAAGAAAGAAATGAAGAAAGGAAG
GAATAAAAGAAGAAAGAAAGAAAAGGAAGAAAGAAAGGAAGAAAGAGAAG
AGAAGAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAGGAGAAAACAA
AGAAAAAGGAAAGAAAAGAAAAGGGAAGGAGAGAGGGAATAAGAGAGGGA
GGGAAAGTAGATAAAATTTACAGAATATAGGAATGTTAAAGTAAAAAACT
GTGGAAATAAATTCAAATTTAATGAAGTTCACACATTTGGACTGAAAATA
TATACCCTTAAAATCCCCAAACTGTCAAAATATTTTAAACAAATACCTTA
AAATTACCTTAAATTCATTTTGTTTGCATTTGAATCAAAGCCCTTAAATA
AGGAAGTGAGGTCAGGAATAAGAGATGTGCAGGTATGTGCAGGATGTGTC
TTGCTCCTGTGGCTGGGAAAAAGAAGAGCAAGGGAGGCACTCTTGAGTCC
AGTCCTTTTCATCACCATCTGAATGGAGCTAGATCTCGA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATATTGGTTCCCTGAACTGTAGAGTGAGGG
CTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCA
AAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGAGGAATTGCAGA
AATTACTGCCACTATCAAGGACTTGAAAGATGCAGGGGTGGTGGTTCCCA
CCACATCTCCGTTTAACTCTCCTATCTGGCCAGTGCAGAAAACAGATGGA
TCATGGAGAATGACAGTTGATTATCGAAAACTAAATCAGGTAGTAACTCC
AATTGCAGCTGCTGTACCAGATGTAGTTTCGTTACTTGAGCAAATTAACA
CATCTCCTGGCACCTGGTATGCAGCTATTGATCTGGCAAATGCCTTCTTC
TCAGTACCTGTCCATAAGGACCACCAGAAGCAATTTGCTTTCAGTTGGCA
AGGCCAACAGTATACCTTCACAGTTTTGCCTCAAGGATATATTAACTCTC
CTGCCCTGTGTCATAATTTAGTTAGAAGGGATCTTGATCGTTTGGATCTT
CCACAAAATATCACATTGGTGCACTATATTGATGACATTATGCTGATTGG
ACCAAGTGAGCAGGAAGTAGCAACCACTTTGGACTCATTGGTAACACATA
TGCGTATCCGAGGATGGGGAATAAATCCA

Query= MSMg01no526_p20.b1 MSMg01no526_p20.b1 CHROMAT_FILE:
MSMg01no526_p20.b1 PHD_FILE: MSMg01no526_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:05 2005
         (578 letters)



>mm_chr4_75295275_75296258
          Length = 984

 Score =  644 bits (333), Expect = 0.0
 Identities = 407/443 (91%), Gaps = 27/443 (6%)
 Strand = Plus / Minus

                                                                       
Query: 148 agaaagagagaa-aaagagagaaagagagaaa-ga--ga--gagagaaagaaagaaatga 201
           ||||||   ||| ||||| ||||||| ||||| ||  ||  || || ||| |||||| ||
Sbjct: 973 agaaag---gaagaaagaaagaaagaaagaaaggaaggaagga-aggaaggaagaaagga 918

                                                                       
Query: 202 agaaaggaaggaataaaagaagaaagaaagaaaaggaagaaagaaaggaagaaagagaag 261
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 917 agaaaggaaggaataaaagaaggaagaaag-aaaggaagaaagaaaggaagaaagagaag 859

                                                                       
Query: 262 agaagaaaaaagaaaagaaaagaaaagaaaagaaaagaaggagaaaacaaagaaaaagga 321
           ||     |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 858 ag-----aaaagaaaagaaaagaaaagaaaagaaaagaaggagaaaacaaagaaaaagg- 805

                                                                       
Query: 322 aagaaaagaaaagggaaggagagagggaataagagagggagggaaagtagataaaattta 381
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ----aaagaaaagggaaggagagagggaataagagagggagggaaagtagataaaattta 749

                                                                       
Query: 382 cagaatataggaatgttaaagtaaaaaactgtggaaataaattcaaatttaatgaagttc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cagaatataggaatgttaaagtaaaaaactgtggaaataaattcaaatttaatgaagttc 689

                                                                       
Query: 442 acacatttggactgaaaatatatacccttaaaatccccaaactgtcaaaatattttaaac 501
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acacatttggactgaaaacatatacccttaaaatccccaaactgtcaaaatattttaaac 629

                                                                       
Query: 502 aaataccttaaaattaccttaaattcattttgttt------gcatttgaatcaaagccct 555
           ||||||||||||||||||||||||||||||| |||      |||||||||||||||||||
Sbjct: 628 aaataccttaaaattaccttaaattcatttttttttattttgcatttgaatcaaagccct 569

                                  
Query: 556 taaataaggaagtgaggtcagga 578
           |||||||||||||||| ||||||
Sbjct: 568 taaataaggaagtgagttcagga 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 984
Length adjustment: 10
Effective length of query: 568
Effective length of database: 974
Effective search space:   553232
Effective search space used:   553232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)