Query= MSMg01no527_h03.b1 MSMg01no527_h03.b1 CHROMAT_FILE:
MSMg01no527_h03.b1 PHD_FILE: MSMg01no527_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:41 2005
(635 letters)
>mm_chr4_16588800_16589834
Length = 1035
Score = 1147 bits (593), Expect = 0.0
Identities = 608/613 (99%)
Strand = Plus / Plus
Query: 23 ttcaagagtagaggctttcattctcttactggaaaggaaaactgtaagggcaaagactta 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttcaagagtagaggctttcattctcttactggaaaggaaaactgtaagggcaaagactta 282
Query: 83 aagtgttagcacatgtaacctcttacctatgtgacacaatggtgctaattaatgttatct 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aagtgttagcacatgtaacctcttacctatgtgacacaatggtgctaattaatgttatct 342
Query: 143 ttaaatcaccatgtttgtatctatctgatgtgggtatgtgctgtgtgtctgtatgtctct 202
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 343 tttaatcaccatgtttgtatctatctgatatgggtatgtgctgtgtgtctgtatgtctct 402
Query: 203 ctgtgtgtctgtgattgtgtgaatgtgggttgtgtacacatagtatgtttttggtggtca 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgtgtgtctgtgattgtgtgaatgtgggttgtgtacacatagtatgtttttggtggtca 462
Query: 263 gagaataacttcaatatcagcccttgacatttactttgtttgagacagagtctaatattt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gagaataacttcaatatcagcccttgacatttactttgtttgagacagagtctaatattt 522
Query: 323 aatgctgtatatactgagctatctggcccatagtttgtagggctccccttgtctgaacct 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aatgctgtatatactgagctatctggcccatagtttgtagggctccccttgtctgaacct 582
Query: 383 cttatctcactgtaggaggggtaaaattacagatgtgtgctactttgtttggcttttttg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cttatctcactgtaggaggggtaaaattacagatgtgtgctactttgtttggcttttttg 642
Query: 443 taattctggagaatctgaacctaactctcatccatgcaaagcaggtacttttccaaccaa 502
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 taattctggagaatctgaacctaactctcatccatgcaaagcaggtacttttccaaccat 702
Query: 503 gccatttctttagtccaattttagctttctcaatataattttccccaattctatgaagga 562
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 703 gccatttctttagtccaattttagctttcacaatataattttccccaattctatgaagga 762
Query: 563 tagagttgtgttcactgatatctaaaagaattatataaaagtttataaagttcataaatc 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 763 tagagttgtgttcactgatatctaaaagaattatataaaagtttataaagttcaaaaatc 822
Query: 623 tgtttcatgccaa 635
|||||||||||||
Sbjct: 823 tgtttcatgccaa 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_h03.g1 MSMg01no527_h03.g1 CHROMAT_FILE:
MSMg01no527_h03.g1 PHD_FILE: MSMg01no527_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:41 2005
(632 letters)
>mm_chr4_16755362_16756389
Length = 1028
Score = 1087 bits (562), Expect = 0.0
Identities = 606/632 (95%), Gaps = 20/632 (3%)
Strand = Plus / Minus
Query: 1 atgatcttgtcattcaatcatctcactaaattgtctgctgttaaactttttgcatatttt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 946 atgatcttgtcattcaatcatctcactaaactgtctgctgttaaactttttgcatatttt 887
Query: 61 tattatatttgttaattctgaatataaatagatagatgatagataaatgatagatagata 120
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 886 tattatatttgttaattctgaatataa----atagatgatagataaat------------ 843
Query: 121 gatagatagatagagtaaactttatgcttttatgcatgccaaatatcttcttatagtctt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 842 gatagatagatagagtaaactttatgcttttatgcatgccaagtatcttcttatagtctt 783
Query: 181 tcatttaatttctaatttgtctgtaatacaataagtgttgatgagaaaaaattgttttta 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 782 tcatttaatttctaatttgtctgtaatacagtaagtgttgatgagaaaaaattgttttta 723
Query: 241 caccaaaataaatttagatttctgtctcataatatggatttaagataggtaaaatggaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 caccaaaataaatttagatttctgtctcataatatggatttaagataggtaaaatggaga 663
Query: 301 gagagaaaatgccttaagttacaagattgaatttttgtgatgttaaatgtaaataatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gagagaaaatgccttaagttacaagattgaatttttgtgatgttaaatgtaaataatata 603
Query: 361 gaaaacaaatgaaaataactaattaactggcccacagaaactcagcatttttaatttaca 420
||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct: 602 gaaaacaaatgaaaataac----taactggcccacagaaactcagtattcttaatttaca 547
Query: 421 atactgaggtgctcaaagctgctgtatgtactatgttaggtttaaaacagaatatctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atactgaggtgctcaaagctgctgtatgtactatgttaggtttaaaacagaatatctttt 487
Query: 481 cataggaaggaaaagaaaagaaaaaatttagtttaaaaatcatcagcaaaacagcaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cataggaaggaaaagaaaagaaaaaatttagtttaaaaatcatcagcaaaacagcaagaa 427
Query: 541 aataccagtgttagaattccactaggggaataaaagacacaaataaactaatctaaataa 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 426 aataccagtgttagaattccacgaggggaataaaagacacaaataaactaatctaaataa 367
Query: 601 gttggatgctttaaatcaataaattagattag 632
||||||||||||||||||||||||||||||||
Sbjct: 366 gttggatgctttaaatcaataaattagattag 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1028
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1018
Effective search space: 633196
Effective search space used: 633196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
