BAC Information

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BAC

Clone NameMSMg01-527I18
Chromosome4 (Build37)
Map Location 14,271,071 - 14,271,356
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527I18.T7 (MSMg01no527_i18.b1)MSMg01-527I18.TJ (MSMg01no527_i18.g1)
ACCAG596874AG596875
length764757
length of high quality
(start - end)		346 (49 - 394)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no527_i18.b1 PHD_FILE: MSMg01no527_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:49 2005CHROMAT_FILE: MSMg01no527_i18.g1 PHD_FILE: MSMg01no527_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTATATACCCTCTACCCTGCTCTCCACCCACCAACTCCCG
CTTCCTGGCCCTGGCCTTCCCGTGTACTGGGGCATATAATCTTCACAAGA
CCAAACGCCTCTCCCCCCATTGATGGCCAACTAGGCCATCCTCTGCTACA
TATGCAGCTAGAGACACAAGCTCTGGGGGTACTGGTTAGTTCATATTGTT
GTTCCTCCTATAGGGTTGCAGAACCCTATAGCTCCTTGAGTACTTTCTCT
TGCCTTCATTGGAGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATC
CACTTCTGTATTTGCCAGGCACCGGCACAGCCTGACAGGAGATAGGTATA
TCANGGTCCTGTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTTGGT
TTTGGTGGTTGCATATGGTATGTATCCCCGGGGTGGGGCAGTTTTCTGAA
TGGGCCTTCCCTTCCATCCCAACTTCCGAATTTTGCCCCGGAAAATTCCC
CCCAAGGGGCCTTTTTTTTCCCCCCTTTCCTAAAAAGGGGAGAGAGAAGT
TTACCCCCCCCCCTTTTGGGGGCGCCTCCCCCTTTTTATCAGGGAAAAAC
CAATTCGGGGGTGTTTTTAAAAAAAAAAAAAAAACAACTTCGCGGGGTTG
TTTTTTTAACCTTTCTGTTTAGTAAGGAGAATTAACCTCCACACCTTTTT
TATGTCTAGGGAGG

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTGTTTCTTTTTTTTCAGTTTGA
TACCAGTCTGCCTGCTCTATGCAGTGAGTTCCAGGACAGACAGTACTACC
CAGTGAAACTGCTTCGGGAAAACAGAATAAACAAAAAGATCACAGCATTA
GGAAGGCTGAGAACCACTGACTTAGACAACAAGGCAAACATCAATCACAC
ATACTTGCTGACAGAGGAAACACTGGCTTCCTCTGCTACAAGAAGAAGCA
CCCCCCATTCTCAAGATCCACCCAAAGCCCTGCCAAGTTGCAGAATCCCT
GTAACCACACTGGCCAGCAAAGGCATANCAAACCTTGCTTTTATCATTGG
TAAATCCAAAAGGGCTGGGCCCACGGGGGGAGGCTTAAAACCCCCAAAGG
GGGGGGGCTTTTTCTTCTAAAAGCCCCCAGAAGGGGGGCCTCCCCCCCTT
TCTTGGGGAAAAAAAAAGAAAAAAAAAAAAATTTTTGGGGGGCGGCGGGG
GGTGTGTTAAAAAAAAAGAGAGGGGGGCCCGGGGGTGGCGCCCCTTTATT
TAATATAAAAAAAAGGAGGGGGGGGGGGGTGGGCCCCACCCCCAAAAAAA
GAAGAAAAAGCCCCTCCCCCCCCCACCCGNAGAGGGGGTGTGGCGGAGGG
NGGAGGGGANTAAAAAACCCACCCTTTTTATTGTTTTTTGGGGGGGGAGA
AAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_i18.g1 MSMg01no527_i18.g1 CHROMAT_FILE:
MSMg01no527_i18.g1 PHD_FILE: MSMg01no527_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:49 2005
         (286 letters)



>mm_chr4_14270871_14271556
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtttcttttttttcagtttgataccagtctgcctgctctatgcagtgagttccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgtttcttttttttcagtttgataccagtctgcctgctctatgcagtgagttccagg 260

                                                                       
Query: 61  acagacagtactacccagtgaaactgcttcgggaaaacagaataaacaaaaagatcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagacagtactacccagtgaaactgcttcgggaaaacagaataaacaaaaagatcacag 320

                                                                       
Query: 121 cattaggaaggctgagaaccactgacttagacaacaaggcaaacatcaatcacacatact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaggaaggctgagaaccactgacttagacaacaaggcaaacatcaatcacacatact 380

                                                                       
Query: 181 tgctgacagaggaaacactggcttcctctgctacaagaagaagcaccccccattctcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgacagaggaaacactggcttcctctgctacaagaagaagcaccccccattctcaag 440

                                                         
Query: 241 atccacccaaagccctgccaagttgcagaatccctgtaaccacact 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccacccaaagccctgccaagttgcagaatccctgtaaccacact 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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