BAC Information

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BAC

Clone NameMSMg01-527N14
Chromosome4 (Build37)
Map Location 62,802,653 - 62,947,895
singlet/doubletdoublet
Overlap geneAmbp, Kif12, Col27a1
Upstream geneOTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618
Downstream geneOrm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527N14.T7 (MSMg01no527_n14.b1)MSMg01-527N14.TJ (MSMg01no527_n14.g1)
ACCAG597105AG597106
length767746
length of high quality
(start - end)		558 (53 - 610)647 (81 - 727)
definitionCHROMAT_FILE: MSMg01no527_n14.b1 PHD_FILE: MSMg01no527_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:16 2005CHROMAT_FILE: MSMg01no527_n14.g1 PHD_FILE: MSMg01no527_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,947,346 - 62,947,895)(62,802,653 - 62,803,299)
sequence
NNTTTAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGACTTAGCCTCGGTTCTAGTGGGTGAGATCACATTAA
CCATTTGAGCAAATGCATCAAAAACTGTATTAAAGAGTCAAGCCTTATTA
TTCAGTGTGTGAGAGGACTGGCTCTGGAATGTTTCCAGCCTGAGTGACTA
CCTAGCAATAGACTTAGCACAGGTAAGTGCTCCACAGGGAAGCCACTGTA
TAGGCACCATCACTAACTTACCTGTTCACCCACAGGTCCTGGCCGTCCAG
GATCCCCTGGTTCCCCCTGCAAAGGAACAAAAATAGAAGAAAAGTCAGGT
CATAAGGTGGGACGCTGAAACCACCCAAGGAAGTGCCAAGGGCCAAGTGG
TCTTAGATGTCATTGGTGATGATGAACAAGAACCCCAATCCCCAGACTTT
GCCCTTGAAGATGCCAAACAGTTAGCAGTAACCAAAGAGCACTACTCCAA
CACTACAATCTCATTCCCTTTGAGTGGGTAATAGAATTCTCCAGCGTCCT
GACTCCTTTCAGACACCAAGCAACCTAATTAATTTTGTTAGGGTGGAAAG
GACTATAAGGTCACAGAGCCAGCTACAAGGAGGGCTAGAATTGGGACCTT
GGTTAGCTTGACTGANGCTATTTCCATGTANGCTGCCCACTTCANGAGGA
ACGTGGAATTGCANNGTAAGATCATTGTAAACTAAGCCTCCCTTCAAGCT
TCATCACAGTAAGGATN

TTTTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTGTACAATAAACAAA
CAAAAACCCACCACGAACCTGATGTTCCACTGGTGGGAGCCAGCCAGCAT
ATGGAACTTGTATTTAATATTTGCCCTCTTAAATATTTATCCTTCAGGAC
ACTCCAAAATGCTCCACTTCAGAGTGGTCCCTCCAAACTCCCATTGGCAG
CTGTCCCTGGCAGATGGGGATGGATATAATCCTGATGATGTTCGTTAGCC
CCAGCTGGGAGACCTTTCCACAACTTTCTGCACAGCTGCCTGTCTCCCTG
GTGGCTTCTAACCTGTCCACTTCAGACCAGAGCTAAGATCATAAGCACTG
CCCCTTCAGACAATCTTTTCTGTTGGAAACTAGAAACCCCAAGTCCCAGA
TTTTGAAGAAAAAGGAAGTGTCTATGTGTCTCGGGAGACTATAGACTGTG
CTAGACTCACATCCTGCCTACCTGCCAGAACACTTCAGCAAATGGCCTCC
AGGCATGAGAAGCAATCCCTTTGCTGAACTAGCCATCCACTCTGGACCCT
GTAGTCCCTTCCCAGAGCACTGGCCTGGTTTCTGCTGCAAGGAAGACTTT
CCACTTGAGAGCTTATCAGGGCAGGCATCTTCAACCTCCATCATTATCTG
CCCAGCACTGGGGTACTGTGTGGATGCAGTTAGTACCAGAAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_n14.b1 MSMg01no527_n14.b1 CHROMAT_FILE:
MSMg01no527_n14.b1 PHD_FILE: MSMg01no527_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:16 2005
         (558 letters)



>mm_chr4_62947138_62948095
          Length = 958

 Score =  994 bits (514), Expect = 0.0
 Identities = 541/550 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   tctgacttagcctcggttctagtgggtgagatcacattaaccatttgagcaaatgcatca 68
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctgacttagcctcggttttagtgggtgagatcacattaaccatttgagcaaatgcatca 699

                                                                       
Query: 69  aaaactgtattaaagagtcaagccttattattcagtgtgtgagaggactggctctggaat 128
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 698 aaagctgtattaaagagtcaagccttattattcagtgtgtgagaggcctggctctggaat 639

                                                                       
Query: 129 gtttccagcctgagtgactacctagcaatagacttagcacaggtaagtgctccacaggga 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtttccagcctgagtgactacctagcaatagacttagcacaggtaagtgctccacaggga 579

                                                                       
Query: 189 agccactgtataggcaccatcactaacttacctgttcacccacaggtcctggccgtccag 248
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agccactgtagaggcaccatcactaacttacctgttcacccacaggtcctggccgtccag 519

                                                                       
Query: 249 gatcccctggttccccctgcaaaggaacaaaaatagaagaaaagtcaggtcataaggtgg 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gatcccctggttccccctgcaaaggaacaaaaatagaagaaaagtcaggtcataaggtgg 459

                                                                       
Query: 309 gacgctgaaaccacccaaggaagtgccaagggccaagtggtcttagatgtcattggtgat 368
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 458 gacgctgaaaccacccaaggaagtgccaagggtcaagtggtcttagatgtcattggtgat 399

                                                                       
Query: 369 gatgaacaagaaccccaatccccagactttgcccttgaagatgccaaacagttagcagta 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gatgaacaagaaccccaatccccagactttgcccttgaagatgccaaacagttagcagta 339

                                                                       
Query: 429 accaaagagcactactccaacactacaatctcattccctttgagtgggtaatagaattct 488
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 338 accaaagagcactactccaacactacaatctcattccctttgagtgggtaatggaattct 279

                                                                       
Query: 489 ccagcgtcctgactcctttcagacaccaagcaacctaattaattttgttagggtggaaag 548
           || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 278 ccggcgtcctgactcctttcggacaccaagcaacctacttaattttgttagggtggaaag 219

                     
Query: 549 gactataagg 558
           ||||||||||
Sbjct: 218 gactataagg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_n14.g1 MSMg01no527_n14.g1 CHROMAT_FILE:
MSMg01no527_n14.g1 PHD_FILE: MSMg01no527_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:16 2005
         (647 letters)



>mm_chr4_62802453_62803499
          Length = 1047

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaactgtacaataaacaaacaaaaacccaccacgaacctgatgttccactggtgggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaactgtacaataaacaaacaaaaacccaccacgaacctgatgttccactggtgggagc 260

                                                                       
Query: 61  cagccagcatatggaacttgtatttaatatttgccctcttaaatatttatccttcaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccagcatatggaacttgtatttaatatttgccctcttaaatatttatccttcaggac 320

                                                                       
Query: 121 actccaaaatgctccacttcagagtggtccctccaaactcccattggcagctgtccctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actccaaaatgctccacttcagagtggtccctccaaactcccattggcagctgtccctgg 380

                                                                       
Query: 181 cagatggggatggatataatcctgatgatgttcgttagccccagctgggagacctttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatggggatggatataatcctgatgatgttcgttagccccagctgggagacctttcca 440

                                                                       
Query: 241 caactttctgcacagctgcctgtctccctggtggcttctaacctgtccacttcagaccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caactttctgcacagctgcctgtctccctggtggcttctaacctgtccacttcagaccag 500

                                                                       
Query: 301 agctaagatcataagcactgccccttcagacaatcttttctgttggaaactagaaacccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctaagatcataagcactgccccttcagacaatcttttctgttggaaactagaaacccc 560

                                                                       
Query: 361 aagtcccagattttgaagaaaaaggaagtgtctatgtgtctcgggagactatagactgtg 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 aagtcccagattttgaagaaaaaggaagggtctatgtgtctcgggagactatagactgtg 620

                                                                       
Query: 421 ctagactcacatcctgcctacctgccagaacacttcagcaaatggcctccaggcatgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagactcacatcctgcctacctgccagaacacttcagcaaatggcctccaggcatgaga 680

                                                                       
Query: 481 agcaatccctttgctgaactagccatccactctggaccctgtagtcccttcccagagcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcaatccctttgctgaactagccatccactctggaccctgtagtcccttcccagagcac 740

                                                                       
Query: 541 tggcctggtttctgctgcaaggaagactttccacttgagagcttatcagggcaggcatct 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 tggcctggtttctgctgcaaggaagactttccacttgagagcttatcaggccaggcatct 800

                                                          
Query: 601 tcaacctccatcattatctgcccagcactggggtactgtgtggatgc 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaacctccatcattatctgcccagcactggggtactgtgtggatgc 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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