Query= MSMg01no528_c07.b1 MSMg01no528_c07.b1 CHROMAT_FILE:
MSMg01no528_c07.b1 PHD_FILE: MSMg01no528_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:40 2005
(684 letters)
>mm_chr4_88694669_88695752
Length = 1084
Score = 1276 bits (660), Expect = 0.0
Identities = 675/680 (99%)
Strand = Plus / Plus
Query: 5 gaattcatattcacagaaaaaccacaatgataattataatgtcttatccacatatacggt 64
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 205 gaatttatattcacagaaaaaccacaataataattataatgtcttatccacatatatggt 264
Query: 65 gtggacaaaacagagtgtgggctttataactaatgaaagcaagaaaacaaatgggttggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggacaaaacagagtgtgggctttataactaatgaaagcaagaaaacaaatgggttggg 324
Query: 125 gaaaaggaagggaggattgtcaggggatttttattttctacctaaattgcaaagtgacta 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaggaagggaggattgttaggggatttttattttctacctaaattgcaaagtgacta 384
Query: 185 ttgttcttgtaagttacttgtgtagtaaaactctcataatgaattgctgttaatatctta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgttcttgtaagttacttgtgtagtaaaactctcataatgaattgctgttaatatctta 444
Query: 245 ttgttttgcaaaagatgacatttctgtttccattatttgtgaatctgtatccatcaatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgttttgcaaaagatgacatttctgtttccattatttgtgaatctgtatccatcaatag 504
Query: 305 tttgtacagtgaagagctgtgacagaaactcataatgccagtctcccaactgtgactgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgtacagtgaagagctgtgacagaaactcataatgccagtctcccaactgtgactgga 564
Query: 365 aagtattcctatacaatgtcctcagaaaatcatttggggtaacttttcaagcttttaaat 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 aagtattcctatacaatgtcctcagaaaatcacttggggtaacttttcaagcttttaaat 624
Query: 425 ttgaaatagatcaagatattataccacgtagtgggtaacatttaactaaaattttgcttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgaaatagatcaagatattataccacgtagtgggtaacatttaactaaaattttgcttg 684
Query: 485 acacctaacatgaaacatcagaaattgaaaatgaaatattgttttttttcccctggctat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacctaacatgaaacatcagaaattgaaaatgaaatattgttttttttcccctggctat 744
Query: 545 aagtaggctaagtgttatgacttgtcattggtgatacttaaacagtgtttaggtaaatta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagtaggctaagtgttatgacttgtcattggtgatacttaaacagtgtttaggtaaatta 804
Query: 605 tttacatctttaaaaacctctaaatgattcagctagctctcaatcatcctcaaagccagc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tttacatctttaaaaacctctaaatgattcagctagctctcaatcatcctcaaagccagc 864
Query: 665 attccactgcaaagcttaat 684
||||||||||||||||||||
Sbjct: 865 attccactgcaaagcttaat 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_c07.g1 MSMg01no528_c07.g1 CHROMAT_FILE:
MSMg01no528_c07.g1 PHD_FILE: MSMg01no528_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:40 2005
(587 letters)
>mm_chr4_88827158_88828144
Length = 987
Score = 1011 bits (523), Expect = 0.0
Identities = 568/587 (96%), Gaps = 10/587 (1%)
Strand = Plus / Minus
Query: 2 gtcttcccctagcagctttcagatgaagatgtagctctgcctgcaccatgcctgcctgcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 gtcttcccctagcagctttcagatgaagatgtagctctgcctgcaccatgcctgcctgcc 919
Query: 62 tagatgttgccatgttctcaccttgatgatgatgatggactgaacctctgaacctgtaag 121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tagatgttgccatgttcccaccttgatgatgatgatggactgaacctctgaacctgtaag 859
Query: 122 ccagctccaattaaatgttgtcctttataagacttgtcttagtcatggtgtctgtttagc 181
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 858 ccagctccaattaaatgttgtcctttataagacttgtcttagtcatggtgtc----tagc 803
Query: 182 agtaagtctaactaagacacctatgaacatctgaatgattagtaacctaacataaactgt 241
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 802 agtaagt----ctaagacacctatgaacatctgaatgattagtaacctaatataaactgc 747
Query: 242 taaaagcaagttcaccaccgatcc-agtgctagggaggccccctggacagggagcgaagg 300
|||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 746 aaaaagcaagttcaccaacgatccaagtgcta-ggaggccccctggacagggagcgaagg 688
Query: 301 gagctagcctgaggaccactagtctggcactgtgcagaacctgacaggctcccagggagg 360
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 687 gagcttgcctgaggaccactagtctggcactgtgcagaacctcacaggctcccagggagg 628
Query: 361 ggagcaagctggagactagaagaaccccacctgaaaccatgggccccaggctgaagagag 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 627 ggagcaagctggagactagaagaaccccacctggaaccatgggccccaggctgaagagag 568
Query: 421 ccccaaactgataatccacaaggtgcccagggaaggagagagcacaagacaagacaggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccccaaactgataatccacaaggtgcccagggaaggagagagcacaagacaagacaggga 508
Query: 481 gctagcctaagatgaccagccttttgctggttgcagcattggatgggccagctggcacag 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 gctagcctaagatgaccagccttttgctggctgcagcattggatgggccagctggcacag 448
Query: 541 gggaggagagcttgtcctggtagtatgggtgtgggagggttggtggg 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gggaggagagcttgtcctggtagtatgggtgtgggagggttggtggg 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
