Query= MSMg01no528_h10.b1 MSMg01no528_h10.b1 CHROMAT_FILE:
MSMg01no528_h10.b1 PHD_FILE: MSMg01no528_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:04 2005
(606 letters)
>mm_chr4_100488012_100489017
Length = 1006
Score = 1093 bits (565), Expect = 0.0
Identities = 598/621 (96%), Gaps = 19/621 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtatacttcagtggaattgacccaatgggctaactggctagtactaggctgaa 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtagacttcagtggaattgacccaatgggctaactggctagtactaggctgaa 264
Query: 65 aggcagttgtggaggtccgctttccttggctgtgacaaagtgcctgcaataaataggtta 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcagttgtggaggtctgctttccttggctgtgacaaagtgcctgcaataaataggtta 324
Query: 125 cagggcgaaaagggtggtctttccactcatggtcacttggcctggctgctcttaccctgt 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagggcaaaaagggtggtctttccactcatggtcacttggcctggctgctcttaccctgt 384
Query: 185 ggtgatacagaatatcatggagaatactgaggaaactgctcatctcataatggccaggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgatacagaatatcatggagaatactgaggaaactgctcatctcataatggccaggaa 444
Query: 245 gcaaacagaagaggaagaggccagggtcccaagtggctctttaaggtggggttgcctacc 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaaacagaagagaaagaggccagggtcccaagtggctctttaaggtggggttgcctacc 504
Query: 305 ttgcctaccttcttcagcttcctctgtgtcctagagttcctgcccctttctctcctcctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgcctaccttcttcagcttcctctgtgtcctagagttcctgcccctttctctcctcctg 564
Query: 365 gactagttcaagcctccaacaccagagccttggagggtcatttaaggtctaaaccatggc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gactagttcaagcctccaacaccagagccttggagggtcatttaaggtctaaaccatggc 624
Query: 425 attggtgatttatcccttttgaaaaagaatattcatttacttatgtgccatgtgtgtact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attggtgatttatcccttttgaaaaagaatattcatttacttatgtgccatgtgtgtact 684
Query: 485 tagcatctatggag-------------------gccagaaggtatcagatcttctggtgc 525
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 685 tagcatctatggagcagatggtatcagaaggaggccagaaggtatcagatcttctggtgc 744
Query: 526 tgaagttacagatggttgtgagtttccatgtggttgctgggaattgaactcaggtttttc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaagttacagatggttgtgagtttccatgtggttgctgggaattgaactcaggtttttc 804
Query: 586 tagaagagcagccatctctct 606
|||||||||||||||||||||
Sbjct: 805 tagaagagcagccatctctct 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_h10.g1 MSMg01no528_h10.g1 CHROMAT_FILE:
MSMg01no528_h10.g1 PHD_FILE: MSMg01no528_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:04 2005
(595 letters)
>mm_chr4_100666872_100667866
Length = 995
Score = 1110 bits (574), Expect = 0.0
Identities = 589/594 (99%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 2 aggacagctaaggctatatagagaagaaaaaaatttacacttatttgtgtatgtgtgcct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 aggacagctaaggctatatagagaagaaaaaaatttacacttatttgtgtatgtgtgcct 936
Query: 62 gtacactgtggtgtggggcagtcagaggtaacttggggggaatcagctctttccttctgt 121
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 935 gtacactgtggtgtggggcagtcagaggtaactt-gggggaatcagctctttccttctgt 877
Query: 122 catgtggattccatggattgaactcaggtcatcaggcatggctgcaagaatctctaccca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 catgtggattccatggattgaactcaggtcatcaggcatggctgcaagaatctctaccca 817
Query: 182 ctgagccatctaaccagcccccaccttctcgatggagaaaaactagaaagcaatctgtgt 241
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 816 ctgagccatctcaccagcccccaccttctcgatggagaaaaacttgaaagcaatctgtgt 757
Query: 242 ggtcagggccctttagcttgacacttttctcaaaccatgtcatgcttgggtgtatccttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggtcagggccctttagcttgacacttttctcaaaccatgtcatgcttgggtgtatccttt 697
Query: 302 ggggaaactatgtcaaaataaattagcttacgaacagaacaggagaaagagagagtcagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ggggaaactatgtcaaaataaattagcttacgaacagaacaggagaaagagagagtcagt 637
Query: 362 ctgtgcccgcctcccacagcatagcccaggcctctgggagctcgaatgccggacaccaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctgtgcccgcctcccacagcatagcccaggcctctgggagctcgaatgccggacaccaga 577
Query: 422 tcttaccatgatcactttcagttcccgagcggccccagtagcgtcgcctcctttctggac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tcttaccatgatcactttcagttcccgagcggccccagtagcgtcgcctcctttctggac 517
Query: 482 tgtgtacgtgtcgctccatgactgcagctatgaaccgggtgttgctgactgcaggacatc 541
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 516 tgtgtacgtgtcgctccatgactgcagctatgaaccgggtgttgctgactgtaggacgtc 457
Query: 542 acggacaattaatgtcattcctgtgccagtgccttcattgttcaacccccttgc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acggacaattaatgtcattcctgtgccagtgccttcattgttcaacccccttgc 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
