Query= MSMg01no528_i06.b1 MSMg01no528_i06.b1 CHROMAT_FILE:
MSMg01no528_i06.b1 PHD_FILE: MSMg01no528_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:08 2005
(695 letters)
>mm_chr4_77265790_77266884
Length = 1095
Score = 1265 bits (654), Expect = 0.0
Identities = 681/690 (98%)
Strand = Plus / Minus
Query: 6 gaattctttcatcattaaagtttctaagaatctactaaatctaccataaggttatatgtg 65
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 895 gaattctttcatcattaaagttgctaagaatctactaaatctaccataaggttatatgtg 836
Query: 66 aaatagttgctattgtgcttatttcaaatgcttttactttcatctatattatctacaata 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aaatagttgctattgtgcttatttcaaatgcttttactttcatctatattatctacaata 776
Query: 126 gaatttcttaatggtaagaataatttgaaaatccccctgtagggcatgaaaaactaaaaa 185
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaatttcttaatggtaaaaataatttgaaaatccccctgtagggcatgaaaaactaaaaa 716
Query: 186 cttgttacaccagtgatagaaaacttggggaaagtgaactgcttttatctgcttacaagg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cttgttacaccagtgatagaaaacttggggaaagtgaactgcttttatctgcttacaagg 656
Query: 246 cagaatatcatacagagttttatgttttccttcagatatcatcttatgaaagtccatttt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cagaatatcatacagagttttatgttttccttcagatatcatcttatgaaagtccatttt 596
Query: 306 atacattcaatgaagattttaggagttagtaatcataaagggtttcatataatctcccca 365
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 595 atacattcaatgaagattttaggagttagtcatcataaagggtttcatataatctcccca 536
Query: 366 acactcaagacccagacataaaaatcaccatatagaaatggttgtcaaaggaaaactact 425
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 535 acactcaagacccagacataaaaatcaacatatagaaatggttgtcaaaggaaaactact 476
Query: 426 ttctctaatggaagttaatctatatgactctattaataaattattgtgtaaagttattac 485
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 475 ttctctaatggaagtaaatctatatgactctattaataaaatattgtgtaaagttattac 416
Query: 486 agaagaaatttaaattacaaatgattatcataatttatagattttaaactatttgttatc 545
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaaagaaatttaaattacaaatgattatcataatttatagattttaaactatttgttatc 356
Query: 546 ttctattgaatatattatatgtcattgacaaaacaaatagtatactcatagaacatttga 605
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 355 ttctattgaatatattatatgtcattgagaaaacaaatagtatactcatagaacatttga 296
Query: 606 aatgttattacattatttaaatagtaggtaatatatgaattactgaagtaattcataaaa 665
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatattattacattatttaaatagtaggtaatatatgaattactgaagtaattcataaaa 236
Query: 666 ttcttaacataaaatagttaataagtacta 695
||||||||||||||||||||||||||||||
Sbjct: 235 ttcttaacataaaatagttaataagtacta 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_i06.g1 MSMg01no528_i06.g1 CHROMAT_FILE:
MSMg01no528_i06.g1 PHD_FILE: MSMg01no528_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:08 2005
(654 letters)
>mm_chr4_77204248_77205302
Length = 1055
Score = 1108 bits (573), Expect = 0.0
Identities = 626/655 (95%), Gaps = 19/655 (2%)
Strand = Plus / Plus
Query: 1 ctgtaagtatgcctggggacatcaaagatcgatacacacacacacacacacacacacaca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctgtaagtatgcctggggacattaaagatcgatacacacacacacacacacacacacaca 278
Query: 61 cacacacacacacacacacacacacatatatatatgcaattattaatatgttagagtcag 120
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 279 cacacacaca------------------tatatatgcaattattaatatgttagagtcag 320
Query: 121 atttt-cccttaagaattaaatcaatttgttctccttctggcaatttatcatactgctaa 179
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 atttttcccttaagaattaaatcaatttgttctcgttctggcaatttatcatactgctaa 380
Query: 180 atatgataggtgaaaattatatctctgagcgattttaattaacatttaaatatatgacag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgataggtgaaaattatatctctgagcgattttaattaacatttaaatatatgacag 440
Query: 240 aatttgagtatcatattttaacggatattagagtacattttccataaaatatctgtatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttgagtatcatattttaacggatattagagtacattttccataaaatatctgtatct 500
Query: 300 tcgcaactgttattctaatttcaactcgaaggatgtttttccttcttttttaccctacat 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgcaactgttatcctaatttcaactcgaaggatgtttttccttcttttttaccctacat 560
Query: 360 gaagcaaagccattaactacatcagcaaaaatatttcttggtgtttgagttttgaaagcc 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gaagcaaagccattaactacatcagcaaaaatattttttggtgtttgagttttgaaagcc 620
Query: 420 tttgttgcaaacctgtgatggaaagcgccatatcatacggaggtcccacagtgccctcta 479
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 621 tttgttgcaaacctgtgatggaaagcgccatatcgtacggaggtcccacagtaccctcta 680
Query: 480 gtggtcacacgttcaattgctcctttcctgcgtcgatattcagggcaaacaatccgaagg 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 gtggtcacacgttcaattgctcctttcctgcgtcgatattcagggcaaagaatccgaagg 740
Query: 540 tagattaaaggagtcttccctaggttttaagtctactcagcatcctttggtccagggatg 599
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 tagattaaaggaatcttccctaggttttaagtctactcagcatcccttggtccagggatg 800
Query: 600 ataagcaaatgcaatcgaagttaagcattagataaaacattagcactactgtaac 654
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataagaaaatgcaatcgaagttaagcattagataaaacattagcactactgtaac 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
