BAC Information

Click to search

BAC

Clone NameMSMg01-528I11
Chromosome4 (Build37)
Map Location 145,752,509 - 145,753,169
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528I11.T7 (MSMg01no528_i11.b1)MSMg01-528I11.TJ (MSMg01no528_i11.g1)
ACCAG597623AG597624
length720738
length of high quality
(start - end)		663 (55 - 717)650 (86 - 735)
definitionCHROMAT_FILE: MSMg01no528_i11.b1 PHD_FILE: MSMg01no528_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:09 2005CHROMAT_FILE: MSMg01no528_i11.g1 PHD_FILE: MSMg01no528_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:09 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCCCAACACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATTTTACGTCAATCTAATATCCTCATCTGCCTGGC
TGTTACCTTGCTCTGAGCATTTCAGCCTAAACAGAGAGACCTCAGAGTGG
TTTCAGATTGTGACCTTGAGTATATTGTGTGATATCTGGAGCTGGCTTTC
ATCATCTATGTCAATGCCAGTGAGAGGTGAAGTGGATATTACAGTCACCG
TTTATAATTACAACAGGGCCACTAACTGAAGAGCAGTAATTCACTTCAAC
TGTCTATGGCCACAGCCACACTGGGTGCTGCAGATTTTATTCCTGGAGTG
TCTAAAGGGTTTGTCCTCTTGATCTCCTTGCTGGGCCCTGACCTGTGCTC
TCTGTCCAGAATTAGCAATGAGGAATAAAGCCAGAATTGGTGTAGCTGGG
GAGGAGAATCTCTTGAGTTTGGGGCCAACCTGATCTACAGAGAAAATTTC
AGGACAGTCAGGACTTCACAGAGAAACCTTATCCTTAACATTTCATGGCT
GGTTGCTCACTCTAAAGCATGGTGAATCTGCTTTCCTCCTCTTGCATCTC
TTAGCCTGCCTATGGAAACCTAGAATTCCCACCTCTTCTTAGCCATTAGC
AGCTAGCATCCTCATTGACTGATTAAAAACTAACTAGGTAACAGGAACTT
CTGTGCTCACAAGCAGATTT

NCTTTTTTCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTTCCAAACAGC
AATTGGTTATTGCAGAATATTGATATTTGATCTATTACATACCATCATAT
GAAGTAAAATTGATAATCATTATCCTAAGATAAGTTAAAAAATTATTTCA
TGCATGCTCCTATATTTTCTAAATTCATGCATGCATGCATCCCATTTACT
GTGTTTAAAAAAATAGCCTTTATATGAGAAAAAAGTATATGTGATTTGAA
TTACATGATTATTCTTTTGAGTTTCCTCCAGTTCCCGCACAGATAATTAA
ATTGTGTGCTGAAGATTGTGTTTAAAAATGTTGAACAATTAAACTTTAAG
TTGTATATTAATAGTCAATATTATATCTCAGAGTTTGAAATTGCTTATGC
AACTTATAAGAAAAAATACTGTTTCTTTAAGAAAATTGTTTTGGGGCAGT
TAAGAACTTGTCCTGGATTGCCTGAAAATGACCCCGAGGATTTGATTTTG
TGTTATAGAGGTTTACATAAAGCTTTAAATGATAAAGATTACAGATAGCT
CCTAAAAAGATACAAACTCAGCATTCTTATATTTATTTGGGTTTTAGAAG
ATAGTTATTTACAGAGACAACTTAAAGATTTTCTCTAATTTCTGATTAAT
AAATAAATTATACACAAGTGACTATAATGACTTTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_i11.b1 MSMg01no528_i11.b1 CHROMAT_FILE:
MSMg01no528_i11.b1 PHD_FILE: MSMg01no528_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:09 2005
         (663 letters)



>mm_chr4_145752306_145753369
          Length = 1064

 Score = 1156 bits (598), Expect = 0.0
 Identities = 646/662 (97%), Gaps = 3/662 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattc-cattttacgtcaatctaatatcctcatctgcctggctgttaccttgctctga 62
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacattttaggtcaatctaatatcctcatctgcctggctgttaccttgctctga 263

                                                                       
Query: 63  gcatttcagcctaaacagagagacctcagagtggtttcagattgtgaccttgagtatatt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcatttcagcctaaacagagagacctcagagtggtttcagattgtgaccttgagtatatt 323

                                                                       
Query: 123 gtgtgatatctggagctggctttcatcatctatgtcaatgccagtgagaggtgaagtgga 182
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 gtgtgatatctggagctggctttcatcatctatgtcaatgccagtgaaaggtgaagtgga 383

                                                                       
Query: 183 tattacagtcaccgtttataattacaacagggccactaactgaagagcagtaattcactt 242
           |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattacagtcactgtttagaatgacaacagggccactaactgaagagcagtaattcactt 443

                                                                       
Query: 243 caactgtctatggccacagccacactgggtgctgcagattttattcctggagt-gtctaa 301
           |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||
Sbjct: 444 caactgtctatggccacagccacactgggtgctgcagattttattcctgt-gttgtctaa 502

                                                                       
Query: 302 agggtttgtcctcttgatctccttgctgggccctgacctgtgctctctgtccagaattag 361
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 503 agggtttgtcctcttgatctccttgctggggcctgacctgtgctctctgtccagaattaa 562

                                                                       
Query: 362 caatgaggaataaagccagaattggtgtagctggggaggagaatctcttgagtttggggc 421
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caatgaggaatcaagccagaattggtgtagctggggaggagaatctcttgagtttggggc 622

                                                                       
Query: 422 caacctgatctacagagaaaatttcaggacagtcaggacttcacagagaaaccttatcct 481
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caacccaatctacagagaaaatttcaggacagtcaggacttcacagagaaaccttatcct 682

                                                                       
Query: 482 taacatttcatggctggttgctcactctaaagcatggtgaatctgctttcctcctcttgc 541
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taacatctcatggctggttgctcactctaaagcatggtgaatctgctttcctcctcttgc 742

                                                                       
Query: 542 atctcttagcctgcctatggaaacctagaattcccacctcttcttagccattagcagcta 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 743 atctcttagcctgcctatggaaacctagaattcccacctcttcttagccatgagcagcta 802

                                                                       
Query: 602 gcatcctcattgactgattaaaaactaactaggtaacaggaacttctgtgctcacaagca 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcatcctcattgactgattaaaaactaactaggtaacaggaacttctgtgctcacaagca 862

             
Query: 662 ga 663
           ||
Sbjct: 863 ga 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space:   688262
Effective search space used:   688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |