Query= MSMg01no529_d07.b1 MSMg01no529_d07.b1 CHROMAT_FILE:
MSMg01no529_d07.b1 PHD_FILE: MSMg01no529_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:04 2005
(646 letters)
>mm_chr4_103844880_103845915
Length = 1036
Score = 1116 bits (577), Expect = 0.0
Identities = 609/625 (97%), Gaps = 10/625 (1%)
Strand = Plus / Plus
Query: 22 tccagcttggcagaaatcaattataagatcataataggtaaagggagaaacatcacaatt 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 222 tccagcttggcagaaatcaattataagatcataataggtaaagggagaaacatcacaagt 281
Query: 82 tgagtgaaccaggaaacactgcaggtcgcagtgtttcaacaaagaaccaacctccctcac 141
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 282 tgagtgaaccaggaaacactgcag-------tgtttcaacaaagaaccaacctccctcac 334
Query: 142 cctgaccttatcctttgcagccccctctcattctttccacccacctgctgcatttagcct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctgaccttatcctttgcagccccctctcattctttccacccacctgctgcatttagcct 394
Query: 202 ggggccagagtgttgtactaatgttggtgtccttatttatcagtgtctcttacctggaga 261
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggggccagagtattgta---atgttggtgtccttatttatcagtgtctcttacctggaga 451
Query: 262 cactagcgcagggttgcccacaggaggtagtgttcccagggagctcacaaattagggtga 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cactagcgcagggttgcccacaggaggtagtgttcccagggagctcacaaattagggtga 511
Query: 322 agaacgtgtggccactcttccctgttagtgagcctttcatgctgagtacaattaactcac 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agaacgtgtggccactcttccctgttagtgagcctttcatgctgagtacaattaactcac 571
Query: 382 cgatactgtccttcttccatcctgaacatggattgattggaatggggacataggctagca 441
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgatactgtccatcttccatcctgaacatggattgattggaatggggacataggctagca 631
Query: 442 gtgacagtaggaagcctttggagtggaaagagctttggagataaaagcctgactttaggc 501
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 632 gtgacagtaggaagcctttggagtggaaagagctttggagataaaagtctgactttaggc 691
Query: 502 tccttttgacacctcttagctggatgtatctgcttcataggtcgccctgcccttactcac 561
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 692 tccttttgacacctcttagctggatatatctgcttcataggtcgccctgcccttactcac 751
Query: 562 ttagccctgtaaacacgagagcattgggaattaagaggctatttcaccatctatgtgaga 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttagccctgtaaacacgagagcattgggaattaagaggctatttcaccatctatgtgaga 811
Query: 622 gtacttggtaataaataaatggttc 646
|||||||||||||||||||||||||
Sbjct: 812 gtacttggtaataaataaatggttc 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1036
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1026
Effective search space: 652536
Effective search space used: 652536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_d07.g1 MSMg01no529_d07.g1 CHROMAT_FILE:
MSMg01no529_d07.g1 PHD_FILE: MSMg01no529_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:04 2005
(637 letters)
>mm_chr4_104024301_104025337
Length = 1037
Score = 1185 bits (613), Expect = 0.0
Identities = 631/637 (99%)
Strand = Plus / Minus
Query: 1 tgacctacccctttctttattaatgaggtcccttggggataatttttcaaagcacctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 tgacctacccctttctttattaatgaggtcccttggggataatttttcaaagcacctcca 925
Query: 61 attttctttcctagactttgccattatttatcactaggtatttatagctatgtataaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 924 attttctttcctagactttgccattatttatcactaggtatttatagctatatataaaat 865
Query: 121 ataataatgtaaaaacaattttataatcacctaaatatctacccacccatagactctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ataataatgtaaaaacaattttataatcacctaaatatctacccacccatagactctagg 805
Query: 181 ctccataaagtccaatcaatacctttacatgtttacatgtttgctttggttactctgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctccataaagtccaatcaatacctttacatgtttacatgtttgctttggttactctgtgg 745
Query: 241 cttgaatgagggtgactgggaatgtatagccagattctaactcctggaatgtgtaaatgt 300
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttgaatgaggatgattgggaatgtatagccagattctaactcctggaatgtgtaaatgt 685
Query: 301 tagttaataagagtctgccaatcgaattaagttatcatattgaaataaagaatataatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagttaataagagtctgccaatcgaattaagttatcatattgaaataaagaatataatct 625
Query: 361 tggattttgtaagtaggcccttaatccagctgcacaatcatgggtgttcttaaaatacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggattttgtaagtaggcccttaatccagctgcacaatcatgggtgttcttaaaatacaa 565
Query: 421 aacacacagagactcaaggaagaatggagagaaaatgtctggtagggcagagactgaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacacacagagactcaaggaagaatggagagaaaatgtctggtagggcagagactgaaat 505
Query: 481 gatgtgaccacaagatcaggagcagctgagactatcaaaagccactaagaatgggcaaca 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 gatgtgaccacaagatcaggagcagctgagactatcaaaagcccctaagaatgggcaaca 445
Query: 541 gaacccagctgtactaacacctgcagacgtccaagagaatacacagctgctgttttaagt 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaacccagctgtgctaacacctgcagacgtccaagagaatacacagctgctgttttaagt 385
Query: 601 gaacagatgtgatggcttgctacagtaactctaggaa 637
|||||||||||||||||||||| ||||||||||||||
Sbjct: 384 gaacagatgtgatggcttgctatagtaactctaggaa 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
