BAC Information

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BAC

Clone NameMSMg01-529D16
Chromosome4 (Build37)
Map Location 5,308,530 - 5,308,922
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529D16.T7 (MSMg01no529_d16.b1)MSMg01-529D16.TJ (MSMg01no529_d16.g1)
ACCAG598158AG598159
length760760
length of high quality
(start - end)		647 (47 - 693)643 (77 - 719)
definitionCHROMAT_FILE: MSMg01no529_d16.b1 PHD_FILE: MSMg01no529_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:06 2005CHROMAT_FILE: MSMg01no529_d16.g1 PHD_FILE: MSMg01no529_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGGTTAGCTCTAACCCCATTTTTAGTTGGGTTGTTTGGTTCT
TTGGAGGTTAACTTCTTAAGGTTTTTATATATTTTGGGTGTTATCCTTCT
ATTAGATGAGGGGTTACCCAAAAGTTTTTCCAATCTGTAGGTTGACAATT
TGTCTTACTGACTATGTCCTTTGCCTTGCAGAAGTTTTTCAGGTTTATGA
GGTTCCATTTATCAATTCTTGATCTTAGAGCCTGAGCCTCTGTATTTCTG
TTTAGGAGACTTCCCCCTGTCCTAATGATTTCAAGGCTCTTTCCGATTTT
CTCTTCTATTAGATTCAGTGTATCTGGTTTTAGGTTGAAGTCCTTGATCC
ATTTGGACTTGAGCTTTGTGTAAAGTGACAAATGTCGATCTATATTAATT
TTTCTACATATAGACTACCAGTTAGACCATTTATTGAAGATGTTTCTTTT
TTCCATCATATATTTTTGTCTTCTTTGTCAAAGATCAAGTGTCCATAACT
ATGTGATTTTATGTCTGGGTTAATTCTATTCCATTGATTGAACTGTCAGT
CTCTGTACCAATATCATGCAGTTTTTATCACTATTGCTCTGTAGTACAGC
TTGAGGTCAGGGATGGTGATTCCCTCAGAAGTTCATTTATTGTTAAGAAT
TGTTTTTGCTCTCCTAGGTTTTCTGTTTTATCATATAAGATTTAGAATTG
CTCTTTCCAT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCAGGATTTTCAGTCCTCAATTT
TCACAGTCCGACAGGAAATGTATTCTGGTTAAAAATTTAAAACATAAGAC
CATAAAACATAAGAAGACAAATTTTCATTTTCAAAAATGCAGCAGAAGAC
ACTAGTGTACAAATGTATACAAAGGCCAGATATTCATTGTGTATTATTTA
GGTGGGAAGACTTACTGCAAATTTGTATTTTTTGAGGTGGAAACAACCAA
CATAAATCGCAATGGACATAAAAAGACACAGATGAAGAAAATATTTTCTT
TATGCCTGCTTGCTCCTACTCTACTCTCATGAGCAAGTATATCTAGAACC
TACTTATTGTAGACTCCAATATAGAACAAAACTGGGTAATTCAGCTTCAT
GAAATGACCACCAGATTCTTGGCCTGCTGTCAGGAGACAAACATTGTTGG
GCTAACAGGCCCACTCTAATAACTCCTTTTAAAATACTGATTAATTCTAT
TAGTTCTCTTCTAAAGAACAATAACTGGTAAAATTAAGTAAGTTCAATTG
TCCTAGAGGGAATTACAGAAACTTAAATATTATTACTCAGGTGGAAGTTT
GGAGGCCAGGATGATAATCAATATGTTTACTACTAACTTATGTAACTATA
CAGTCATTCTCAAAATGTCAGACTGTAGTTACACACACAGACACACACAC
ACACACAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_d16.g1 MSMg01no529_d16.g1 CHROMAT_FILE:
MSMg01no529_d16.g1 PHD_FILE: MSMg01no529_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:06 2005
         (643 letters)



>mm_chr4_5307880_5308922
          Length = 1043

 Score =  760 bits (393), Expect = 0.0
 Identities = 393/393 (100%)
 Strand = Plus / Minus

                                                                        
Query: 251  cacagatgaagaaaatattttctttatgcctgcttgctcctactctactctcatgagcaa 310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 cacagatgaagaaaatattttctttatgcctgcttgctcctactctactctcatgagcaa 984

                                                                        
Query: 311  gtatatctagaacctacttattgtagactccaatatagaacaaaactgggtaattcagct 370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  gtatatctagaacctacttattgtagactccaatatagaacaaaactgggtaattcagct 924

                                                                        
Query: 371  tcatgaaatgaccaccagattcttggcctgctgtcaggagacaaacattgttgggctaac 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  tcatgaaatgaccaccagattcttggcctgctgtcaggagacaaacattgttgggctaac 864

                                                                        
Query: 431  aggcccactctaataactccttttaaaatactgattaattctattagttctcttctaaag 490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  aggcccactctaataactccttttaaaatactgattaattctattagttctcttctaaag 804

                                                                        
Query: 491  aacaataactggtaaaattaagtaagttcaattgtcctagagggaattacagaaacttaa 550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  aacaataactggtaaaattaagtaagttcaattgtcctagagggaattacagaaacttaa 744

                                                                        
Query: 551  atattattactcaggtggaagtttggaggccaggatgataatcaatatgtttactactaa 610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  atattattactcaggtggaagtttggaggccaggatgataatcaatatgtttactactaa 684

                                             
Query: 611  cttatgtaactatacagtcattctcaaaatgtc 643
            |||||||||||||||||||||||||||||||||
Sbjct: 683  cttatgtaactatacagtcattctcaaaatgtc 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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