BAC Information

Click to search

BAC

Clone NameMSMg01-529H03
Chromosome4 (Build37)
Map Location 17,867,974 - 17,868,276
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529H03.T7 (MSMg01no529_h03.b1)MSMg01-529H03.TJ (MSMg01no529_h03.g1)
ACCAG598324AG598325
length745749
length of high quality
(start - end)		655 (50 - 704)342 (80 - 421)
definitionCHROMAT_FILE: MSMg01no529_h03.b1 PHD_FILE: MSMg01no529_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:25 2005CHROMAT_FILE: MSMg01no529_h03.g1 PHD_FILE: MSMg01no529_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAGTTCTGTACCCCATTTTAATAGGGTTATTTGAT
TTTCTGGGGTCCAACTTATATATATATATATATTGGATAGTAGTCCCCTA
TCTGATTTAAGATTGGTAAAGATTGTCTCCCAATATGGTGTTGGCCTTTT
TGTATTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGAAGCTTTGAAG
TTTTATGAGGTCCCATTTGTCATTTCTCAATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTCCCCCTGTTCTCATAACTTTGAGGCTTTTC
CCCCACTTTCTCCTCTTTAAGTTTCAGTGTCTCCAGTTTTATGTGGAGTT
CCTTGATCCACTTAGACTTGAGGTTTGTACAAGGAGATAAGAATGGATCA
ATTCACATTCTTCTATATGATAACCACCAGTTGTGCCAGCACAATTTGTT
GAAAATGCTGTCTTTTTTCCACTGGATGGTTCTAGCTCCCTTGTGAAAGT
TCAAGTGACCATGGGTGTGTGGGTTCATTTCTGGGTCTTCAATTTTATTC
CATTGATCTACCTTTCTGTCATTGTAGCAGTACCATGCAGTTTTCATCAC
AATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGATCATTCCCCTGAGAG
GTTGTTTTATTGTTGAGAATAGTTTTTGCTGTCTAGAGGTTCTTT

NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTAGTTTTCTCCTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTTCGAGACAGGGTTTCT
CTGCGTAGCTCTGGCTGTCCTGGAATTCACTTTGTAGACCAGGCTGACCT
CGAACTCAGAGATCTGCCTGCCTCTGCCTCACAAGTGCTGGGAAAAAAGG
TGTGCGCCACGACCCCCCGGCTACTTTTCTCCTTTTTTGGTGGAAAAAAA
AAAAAAAAAAAAAAAAGACCCAAATCGTCTTGGGAATCTCATCTAACATA
TTGTTGTCTATCACGAAAGGAAGCTGGGGTAGGACACAAAGGGAAGCACG
TGGGAGCATTAACGAAAGCACACACCAAGGAGAAAAACCATTCACTCTGG
CTTGCCCTCTGGGGATGGTTCAGTTTATGCCTTACATTGGCCACATATGG
GACTGTTCACAGTTTAATGGGCATTCCTACTTGAACTAACAACTTAAAAG
ATGACCCACAGGCCACTCTTATAGAGGGGGTTACACAAATCAGTTCTCCT
TTCCAGGATTCTCACACTGACAACTAAGATTCGCCATCACAGATATCCTA
TGGAAAATAATGGATTTTGGTTTTCTCATATAATTAATTCATTAAGAAGA
ATTGTCCGTTTTAGCAACCAACTTTCATTTCTGCCCATGGGTATGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_h03.g1 MSMg01no529_h03.g1 CHROMAT_FILE:
MSMg01no529_h03.g1 PHD_FILE: MSMg01no529_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:25 2005
         (342 letters)



>mm_chr4_17867537_17868277
          Length = 741

 Score =  404 bits (209), Expect = e-117
 Identities = 285/321 (88%), Gaps = 22/321 (6%)
 Strand = Plus / Minus

                                                                       
Query: 25  tttttttttttttttttttttttttagtttttcgagacagggtttctctgcgtagctctg 84
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 740 tttttttttttttttttttttttttggttttt-gagacagggtttctctgcgtagctctg 682

                                                                       
Query: 85  gctgtcctggaattcactttgtagaccaggctgacctcgaactcagagatctgcctgcct 144
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgtcctggaattcactctgtagaccaggctgacctcgaactcagagatctgcctgcct 622

                                                                       
Query: 145 ctgcctcacaagtgctgggaaaaaaggtgtgcgccacgacccc--ccggctacttttctc 202
           ||||||| ||||||||||||  |||||||||| ||||  ||||  || ||||||||||||
Sbjct: 621 ctgcctcgcaagtgctgggactaaaggtgtgcaccac--ccccgcccagctacttttctc 564

                                                                       
Query: 203 cttttttggtg--gaaaaaaaaaaaaaaaaaaaaaaagacccaaatcgtcttgggaatct 260
           |||||||| ||  ||||||||||              |||| ||||||||||||||||||
Sbjct: 563 cttttttgttgtagaaaaaaaaa--------------gaccaaaatcgtcttgggaatct 518

                                                                       
Query: 261 catctaacatattgttgtctatcacgaaaggaagctggggtaggacacaaagggaagcac 320
            |||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 517 tatctaacatattattgtctatcatgaaaggaagctggg-taggacacaaagggaagcac 459

                                
Query: 321 gtgggagcattaacgaaagca 341
           ||||||||| ||| |||||||
Sbjct: 458 gtgggagcagtaatgaaagca 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |