BAC Information

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BAC

Clone NameMSMg01-529L09
Chromosome4 (Build37)
Map Location 146,335,804 - 146,336,486
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529L09.T7 (MSMg01no529_l09.b1)MSMg01-529L09.TJ (MSMg01no529_l09.g1)
ACCAG598527AG598528
length764740
length of high quality
(start - end)		687 (49 - 735)663 (78 - 740)
definitionCHROMAT_FILE: MSMg01no529_l09.b1 PHD_FILE: MSMg01no529_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:47 2005CHROMAT_FILE: MSMg01no529_l09.g1 PHD_FILE: MSMg01no529_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAAACTTACTTTGTTAAGCTTGCTCTGAAATTTCTAACTCTG
TATATCGTAAATAGTAATGCTTTATTTCTTTCAATATCTCTCTTTCAATA
CTGGAGTCAATTCGTCTGTATAGGTCATAGTTACTAAATTCCAAGCCCAG
TGTAGGCTCAAGGACTGCCTAGGACATTGATGAAGGCCAGGAAGCAAAGT
TCAACCTAATTAAGTATTTGAGAAATCATTCTTTGGAGGCACCTATAATA
AAACAAAAGTGAAAGAAAGTACACAGAACCATTCACCAACTATTGCAAGG
ACAAATCTGAAACAAATTTGTTTATGGGACGCCAGAATCATTCCAGGAGA
CAAGTTTCCTTGAAATAATATGCGTCAGGACTGAGGCCAAGGTTTTGGGC
CTGTCATGCAATTTTTACTGTAGTGGGTGTGGCATTATTGTATAGTTCCC
CACCACCTCTTTAGTTCTGATTCTTTTTGACATCATTACTAATTTAAATT
TTTTCCAAAGAGGAAGTTGTTGCTACTCACAATACATATTGTTAGAAATA
GGCAAGTGTATATGTGTGCATAACTGCCTCTTCTCCAGCCATCTTAGCCT
TGGCAGACTCATTGGATGGTGATGAGAAGGAGTGAAATCATTTGAAGGCA
TTTGAATGCTTGGTGTTAACTGCAAGCCTCCCACCTCCACCAGATGCATG
GCATGAACTTTGTG

NNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGCCTTCTGAGAGTGCGT
TTGTCAGTAAAGCATTTGCCACATTCACTGCATTTGTACGGTTTCTCTCC
TGTATGAATTCTCTGATGAATACCAAGATCGAATTTTCGGGTAAAGCATT
TGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGA
TGAGTTCTCAGACTGCCTTTTTCAGTAAAGCACTTGTCACATTCACTGCA
TTTGTAAGATTTCTCTCCTGTATGAATTTTCTGATGATTATTAAGATGGG
ATTTGTGGATAAAGCATTTGTCACATTCACTGCATTTGTAAGTTTTCTCT
CCTGTATGAATTCTCTGATGAATTGTCAGACTGCCTTTTTCAGTAAAGCA
TTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTTTATGAATTCTCT
GATGAATATTAAGATGGGATTTGTGGGTAAAGCATTTGTCACATTCACTA
CATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATTCTCAGATT
GCCTATTCCAGTAAAGCATTTGTCACATTCACTGCATTTGCAAGGTTTCT
CTCCTATATGAATTCTCTGATGAATTCTCAGACTGCATTTTACAGTAAAG
CATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_l09.b1 MSMg01no529_l09.b1 CHROMAT_FILE:
MSMg01no529_l09.b1 PHD_FILE: MSMg01no529_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:47 2005
         (687 letters)



>mm_chr4_146335600_146336686
          Length = 1087

 Score = 1297 bits (671), Expect = 0.0
 Identities = 680/683 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaacttactttgttaagcttgctctgaaatttctaactctgtatatcgtaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaacttactttgttaagcttgctctgaaatttctaactctgtatatcgtaaat 264

                                                                       
Query: 65  agtaatgctttatttctttcaatatctctctttcaatactggagtcaattcgtctgtata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtaatgctttatttctttcaatatctctctttcaatactggagtcaattcgtctgtata 324

                                                                       
Query: 125 ggtcatagttactaaattccaagcccagtgtaggctcaaggactgcctaggacattgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtcatagttactaaattccaagcccagtgtaggctcaaggactgcctaggacattgatg 384

                                                                       
Query: 185 aaggccaggaagcaaagttcaacctaattaagtatttgagaaatcattctttggaggcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggccaggaagcaaagttcaacctaattaagtatttgagaaatcattctttggaggcac 444

                                                                       
Query: 245 ctataataaaacaaaagtgaaagaaagtacacagaaccattcaccaactattgcaaggac 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 ctataataaaacaaaagtgaaagaaagcacacagaaccattcaccaactattgcaaggac 504

                                                                       
Query: 305 aaatctgaaacaaatttgtttatgggacgccagaatcattccaggagacaagtttccttg 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 aaatctgaaacaaatttgtttatgggacgccagaatcgttccaggagacaagtttccttg 564

                                                                       
Query: 365 aaataatatgcgtcaggactgaggccaaggttttgggcctgtcatgcaatttttactgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaataatatgcgtcaggactgaggccaaggttttgggcctgtcatgcaatttttactgta 624

                                                                       
Query: 425 gtgggtgtggcattattgtatagttccccaccacctctttagttctgattctttttgaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgggtgtggcattattgtatagttccccaccacctctttagttctgattctttttgaca 684

                                                                       
Query: 485 tcattactaatttaaattttttccaaagaggaagttgttgctactcacaatacatattgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcattactaatttaaattttttccaaagaggaagttgttgctactcacaatacatattgt 744

                                                                       
Query: 545 tagaaataggcaagtgtatatgtgtgcataactgcctcttctccagccatcttagccttg 604
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 tagaaataggcaagtgtatatgtgtccataactgcctcttctccagccatcttagccttg 804

                                                                       
Query: 605 gcagactcattggatggtgatgagaaggagtgaaatcatttgaaggcatttgaatgcttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcagactcattggatggtgatgagaaggagtgaaatcatttgaaggcatttgaatgcttg 864

                                  
Query: 665 gtgttaactgcaagcctcccacc 687
           |||||||||||||||||||||||
Sbjct: 865 gtgttaactgcaagcctcccacc 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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