Query= MSMg01no529_m22.b1 MSMg01no529_m22.b1 CHROMAT_FILE:
MSMg01no529_m22.b1 PHD_FILE: MSMg01no529_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:54 2005
(686 letters)
>mm_chr4_120058183_120059268
Length = 1086
Score = 1257 bits (650), Expect = 0.0
Identities = 674/682 (98%)
Strand = Plus / Plus
Query: 5 gaattctcactctgtaaagaaactgggtccagaggaagtgaggccctgcttctgtctggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcactctgtaaagaaactgggtccagaggaagtgaggccctgcttctgtctggg 264
Query: 65 tttccaccaatgggaggggagccagtcgcttctactttgtccagtgttaagggaaggcct 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tttccaccaatgggaggggagccagttgcttctactttgtccagtgttaagggaaggcct 324
Query: 125 agcgatagctacatcagccttggtgtatgactctccactgtagatgtcagcaaatgctac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcgatagctacatcagccttggtgtatgactctccactgtagatgtcagcaaatgctac 384
Query: 185 agacaggattcctttgtcctttttcactttgggttgttaaacaaggctcaattttcaaac 244
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 385 agacaggattcctttgtccttttttactttgggttgttaaaaaaggctcaattttcaaac 444
Query: 245 atttgccagcacaccattgggttcttctctccacaggagaagggataataagtatgagtg 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttgccagcacaccattggcttcttctctccacaggagaagggataataagtatgagtg 504
Query: 305 gggttgcttgggaagaactcctgtcagagaacaggcaaactgtgagttttccattaatat 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 gggttgcttgggaagaactcctgtcagagaacaggcaaactgtgaattttccattaatat 564
Query: 365 tcatgtggtctgtgactgtaggtatcagaaccaccagaggatcctagtgacaatgtttgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatgtggtctgtgactgtaggtatcagaaccaccagaggatcctagtgacaatgtttgc 624
Query: 425 tgggctgttctgagccaggagcttatagagggggaccctgggatctgcattttctaccag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgggctgttctgagccaggagcttatagagggggaccctgggatctgcattttctaccag 684
Query: 485 gtctcctaagatgatactttggtgtctgagtttggttgtcacaactttttttatccactc 544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 gtctcctaagatgatactttggtgtctgagtttggttgtcacaacattttttatccactc 744
Query: 545 tgtcatatcaagggacacctcagctacacacagaaaaggttagaccatcaaagaagataa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtcatatcaagggacacctcagctacacacagaaaaggttagaccatcaaagaagataa 804
Query: 605 aattctgtctctatttccagaatgcctgctgtatgctagatgaaggtaggggaagctaga 664
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 805 aattctgtctctatttccagaatgcctgccgtatgctagctgaaggtaggggaagctaga 864
Query: 665 gtctccatcttggttctattcc 686
||||||||||||||||||||||
Sbjct: 865 gtctccatcttggttctattcc 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_m22.g1 MSMg01no529_m22.g1 CHROMAT_FILE:
MSMg01no529_m22.g1 PHD_FILE: MSMg01no529_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:55 2005
(576 letters)
>mm_chr4_120225741_120226712
Length = 972
Score = 1075 bits (556), Expect = 0.0
Identities = 570/576 (98%), Gaps = 4/576 (0%)
Strand = Plus / Minus
Query: 1 atcttttgcaggggttccaccatgctgtaataataagttagcactcctaatagaaaaggt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 772 atcttttgcaggggttccaccatgctgtaataataaattagcactcctaatagaaaaggt 713
Query: 61 gcttggtaggaggagaggtcagaaagctaacaaggattttatgtcagcatgtggtcacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gcttggtaggaggagaggtcagaaagctaacaaggattttatgtcagcatgtggtcacag 653
Query: 121 cacagaggaggaggcctggccaggcggggcctcttcccaggcctcaaggcagagagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cacagaggaggaggcctggccaggcggggcctcttcccaggcctcaaggcagagagttca 593
Query: 181 gattaaaatattatctctcagcagctcaacagcaccactagcagcccaggggcagaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gattaaaatattatctctcagcagctcaacagcaccactagcagcccaggggcagaggga 533
Query: 241 tacacatattcccagagcccctatgaatgctggcattagctgcagtgctcctgttgtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tacacatattcccagagcccctatgaatgctggcattagctgcagtgctcctgttgtgtt 473
Query: 301 tctgttatctaagcggagtttaggaacatttcattcactctatagaaaagggctcaacag 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 472 tctgttatctaagcggagtttaggaacattccattcactctatagaaaagggctcaacag 413
Query: 361 gtgtgggctgctgccaccttaccctaaagctctgagattgtgtcatggtgtagagcaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtgtgggctgctgccaccttaccctaaagctctgagattgtgtcatggtgtagagcaggg 353
Query: 421 tgaacctaactgtagttgggacatcactgtggtggtggtgtttgtttagggttttttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgaacctaactgtagttgggacatcactgtggtggtggtgtttgtttagggttttttttt 293
Query: 481 ttacacacacactccccccccccatagccttttttttttttttaaatgacatttatttat 540
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 292 ttacacacacact--ccccccccatagcc--ttttttttttttaaatgacatttatttat 237
Query: 541 tttggttatgtttgtgtgcttgaatgtgtgcgtgcc 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttggttatgtttgtgtgcttgaatgtgtgcgtgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 972
Length adjustment: 10
Effective length of query: 566
Effective length of database: 962
Effective search space: 544492
Effective search space used: 544492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
