BAC Information

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BAC

Clone NameMSMg01-529N08
Chromosome4 (Build37)
Map Location 123,801,336 - 123,941,544
singlet/doubletdoublet
Overlap genenone
Upstream geneBmp8b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529N08.T7 (MSMg01no529_n08.b1)MSMg01-529N08.TJ (MSMg01no529_n08.g1)
ACCAG598619AG598620
length744739
length of high quality
(start - end)		637 (53 - 689)595 (82 - 676)
definitionCHROMAT_FILE: MSMg01no529_n08.b1 PHD_FILE: MSMg01no529_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:56 2005CHROMAT_FILE: MSMg01no529_n08.g1 PHD_FILE: MSMg01no529_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,801,336 - 123,801,968)(123,940,950 - 123,941,544)
sequence
NTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGTGGCATAAAAGTGTCTCTTTTTCTTTTTCTTTTTC
TTTTTCTTTTTCTTTTTCTTTTTTTCTTTTCCTCTTCCTCTGCCTCTTCT
TCTTCTTCGTTTGTTTTGTTTGTTTGTCTGTTTGTTTGTTTGTTTTTCGA
GACAGGGTTTCTCTGTGCAGTCCTGACTGTCCTGTAACTCACTTTGTAGA
CCAGGCTGGCTTCGAACTCTGAAATCCACCTGCCTCTGCCTCCCAAGTGC
TGGGATTACAGGCGTGCGCCACTACAGCCTGGCCAGTGTCTCTGCTTCTT
TATGGGGATTTTCCAAGGTCCCTTTGCAAAGTAGGTGGACGATGGAAGGA
CCAGAAGTGGTTAGCTCTGTGGTTAACGAACCACACATGTTTCTTAATTC
CTATGCTCCTCAGTTTCCTCCTTATTCCTAATAACACCTCCTCAAGAAAT
TAGGATTAAAGGATTTAAAATATGCATAGCGATAGCACCTGCCCAGTGCT
TCGTAATGATAGCAGTTGTATTTTCTGCCATCACTGCTGTTATATATGAC
TATTACTACTATTACAATGATAATTTTATGTCACTATTCTTACTATTATT
GCATGTATCTGTTTTCCAATTGCTATAACTAAATACCCAACTCTGAAGAA
TTTACAAAGAGAAGAGCTTTATTCAGCTCATCATTTTGGAGGTT

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTCGGATGTTGATGC
GGAGTGCCTTGGAGCCTACACATGCCGCGTGGCAGCACACACGCCAGGCA
CTGAGGGGATGGTTTGAACTGACCAGTTCAATGATCTCATTGTTGCTGGG
TCACAGCTCTCCCCAAGTCACAAGTGAACTGAGTTTGAGCCGATCTCCTT
TGGGTTCTGGGTTGTGGCATAGCATCCAATGAACATAAGACAGTGCTCTC
AGGTGCTCTGGTGGAAACATCTAGTAAGCAATCTAAACTGCTGTAACTGG
CTGACAACTGGGAGCCGGCTATTCCAGAAGGAAGCCACTGGGACCTCAGG
AGAGACTCTTCCCATGTCCCGGGACAGCAAGATTATTAGTTTAAATACTG
TGGAATCACCATTCTTCAGAAACAGTGCGTGCCTGAACTAAGACTAACCT
CTACTATGTGGATTCATCTTTCTGGATGAGTTTTCATTGATTGATGCCTG
TGGTTATGTCAGAGGCAGAAGACAGAGAGAGACCAGGAGAGGGAGAGCAC
CTGGCCCTTGGTGATGTAACATCCTGTAACTGGGTAGAGAGCAGTCTGTT
CAGAGATTCCACTTATGTGAAGCCTGGACTCTTGGCTAAGAATTCCAGGA
TGCTTCCCTGTGAAGCAAACCTAGACTTCAAACAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_n08.b1 MSMg01no529_n08.b1 CHROMAT_FILE:
MSMg01no529_n08.b1 PHD_FILE: MSMg01no529_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:56 2005
         (637 letters)



>mm_chr4_123801132_123802168
          Length = 1037

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtggcataaaagtgtctctttttctttttctttttctttttctttttctttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtggcataaaagtgtctctttttctttttctttttctttttctttttctttt 264

                                                                       
Query: 65  tctttttttcttttcctcttcctctgcctcttcttcttcttcgtttgttttgtttgtttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttttttcttttcctcttcctctgcctcttcttcttcttcgtttgttttgtttgtttg 324

                                                                       
Query: 125 tctgtttgtttgtttgtttttcgagacagggtttctctgtgcagtcctgactgtcctgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgtttgtttgtttgtttttcgagacagggtttctctgtgcagtcctgactgtcctgta 384

                                                                       
Query: 185 actcactttgtagaccaggctggcttcgaactctgaaatccacctgcctctgcctcccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcactttgtagaccaggctggcttcgaactctgaaatccacctgcctctgcctcccaa 444

                                                                       
Query: 245 gtgctgggattacaggcgtgcgccactacagcctggccagtgtctctgcttctttatggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgctgggattacaggcgtgcgccactacagcctggccagtgtctctgcttctttatggg 504

                                                                       
Query: 305 gattttccaaggtccctttgcaaagtaggtggacgatggaaggaccagaagtggttagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gattttccaaggtccctttgcaaagtaggtggacgatggaaggaccagaagtggttagct 564

                                                                       
Query: 365 ctgtggttaacgaaccacacatgtttcttaattcctatgctcctcagtttcctccttatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtggttaacgaaccacacatgtttcttaattcctatgctcctcagtttcctccttatt 624

                                                                       
Query: 425 cctaataacacctcctcaagaaattaggattaaaggatttaaaatatgcatagcgatagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctaataacacctcctcaagaaattaggattaaaggatttaaaatatgcatagcgatagc 684

                                                                       
Query: 485 acctgcccagtgcttcgtaatgatagcagttgtattttctgccatcactgctgttatata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acctgcccagtgcttcgtaatgatagcagttgtattttctgccatcactgctgttatata 744

                                                                       
Query: 545 tgactattactactattacaatgataattttatgtcactattcttactattattgcatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgactattactactattacaatgataattttatgtcactattcttactattattgcatgt 804

                                            
Query: 605 atctgttttccaattgctataactaaataccca 637
           |||||||||||||||||||||||||||||||||
Sbjct: 805 atctgttttccaattgctataactaaataccca 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_n08.g1 MSMg01no529_n08.g1 CHROMAT_FILE:
MSMg01no529_n08.g1 PHD_FILE: MSMg01no529_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:57 2005
         (595 letters)



>mm_chr4_123940750_123941744
          Length = 995

 Score = 1135 bits (587), Expect = 0.0
 Identities = 593/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttcggatgttgatgcggagtgccttggagcctacacatgccgcgtggcagcacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tctcttcggatgttgatgcggagtgccttggagcctacacatgccgcgtggcagcacaca 736

                                                                       
Query: 61  cgccaggcactgaggggatggtttgaactgaccagttcaatgatctcattgttgctgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cgccaggcactgaggggatggtttgaactgaccagttcaatgatctcattgttgctgggt 676

                                                                       
Query: 121 cacagctctccccaagtcacaagtgaactgagtttgagccgatctcctttgggttctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cacagctctccccaagtcacaagtgaactgagtttgagccgatctcctttgggttctggg 616

                                                                       
Query: 181 ttgtggcatagcatccaatgaacataagacagtgctctcaggtgctctggtggaaacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttgtggcatagcatccaatgaacataagacagtgctctcaggtgctctggtggaaacatc 556

                                                                       
Query: 241 tagtaagcaatctaaactgctgtaactggctgacaactgggagccggctattccagaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tagtaagcaatctaaactgctgtaactggctgacaactgggagccggctattccagaagg 496

                                                                       
Query: 301 aagccactgggacctcaggagagactcttcccatgtcccgggacagcaagattattagtt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 495 aagccactgggacctcaggagagactcttcccatgtcccgggatagcaagattattagtt 436

                                                                       
Query: 361 taaatactgtggaatcaccattcttcagaaacagtgcgtgcctgaactaagactaacctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taaatactgtggaatcaccattcttcagaaacagtgcgtgcctgaactaagactaacctc 376

                                                                       
Query: 421 tactatgtggattcatctttctggatgagttttcattgattgatgcctgtggttatgtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tactatgtggattcatctttctggatgagttttcattgattgatgcctgtggttatgtca 316

                                                                       
Query: 481 gaggcagaagacagagagagaccaggagagggagagcacctggcccttggtgatgtaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaggcagaagacagagagagaccaggagagggagagcacctggcccttggtgatgtaaca 256

                                                                  
Query: 541 tcctgtaactgggtagagagcagtctgttcagagattccacttatgtgaagcctg 595
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 255 tcctgtaactgggtagagagcagtctgttcagagattccacttaggtgaagcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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