Query= MSMg01no529_p24.b1 MSMg01no529_p24.b1 CHROMAT_FILE:
MSMg01no529_p24.b1 PHD_FILE: MSMg01no529_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:10 2005
(546 letters)
>mm_chr4_34902029_34902974
Length = 946
Score = 1029 bits (532), Expect = 0.0
Identities = 538/540 (99%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 7 gaattcaaatcccagcaaccacatggtggctcacaaccatccgtaatgagatctgacacc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gaattcaaatcccagcaaccacatggtggctcacaaccatccgtaatgagatctgacacc 819
Query: 67 ctttcctggagtgtctgaagacagctacagtgtacttacatataataataaataaatcta 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctttcctggagtgtctgaagacagctacagtgtacttacatataataataaataaatct- 760
Query: 127 aaaaaaaaaaaaaagaaagaaaagatgtccctgaaaacagacattttacctaagtcatga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaaaaaaaaaaaaagaaagaaaagatgtccctgaaaacagacattttacctaagtcatga 700
Query: 187 tgctcttcgtgggggtgaacggcaagaggcagaagtgagattgtagcgtgtctgaacctc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgctcttcgtgggggtgaacggcaagaggcagaagtgagattgtagcgtgtctgaacctc 640
Query: 247 gcttcagtgtgcttcaggtctttgttggtaaatgcttgcagcgatgttattatttcagca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gcttcagtgtgcttcaggtctttgttggtaaatgcttgcagcgatgttattatttcagca 580
Query: 307 caggatccactacatttcttcctccctaaagaccgtaggtccctgagaacattgggccca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 caggatccactacatttcttcctccctaaagaccgtaggtccctgagaacattgggccca 520
Query: 367 tgtcctagtatgtcacacagtaagacaagtaaatgaccaccaggagttcggccatattca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtcctagtatgtcacacagtaagacaagtaaatgaccaccaggagttcggccatattca 460
Query: 427 gcacgtgtacgctgactgtaacgcggtataaagcttcctgtgtttggctcggattgggag 486
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 459 gcacgtgtacgctgactgtaacgcggtataaagcttcctgtgtttggcacggattgggag 400
Query: 487 agtacctagatcacacactgtgttctttctttaacctgcatagaccaaagcccccggaga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agtacctagatcacacactgtgttctttctttaacctgcatagaccaaagcccccggaga 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_p24.g1 MSMg01no529_p24.g1 CHROMAT_FILE:
MSMg01no529_p24.g1 PHD_FILE: MSMg01no529_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:10 2005
(583 letters)
>mm_chr4_34741205_34742187
Length = 983
Score = 1035 bits (535), Expect = 0.0
Identities = 571/583 (97%)
Strand = Plus / Plus
Query: 1 cctttgtagaccaggttggcctcgaactcacacagacccggcctgcctctgccttctgag 60
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||
Sbjct: 201 cctttgtagaccaggttggccttgaactcacacagaccctgcctgcctctgccttccgaa 260
Query: 61 tgccaagattaaaggtgtggaccatgtctgcagttttctgtataaggttcttttcacatt 120
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccaatattaatggtgtggaccacgtctgcagttttctgtataaggttcttttcacatt 320
Query: 121 cctaaacagaacccactgcgatgtcctagcttgtgagatcaaaactcacacagttcactt 180
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cctaaacagaacccactgtgatgtcctagcttgtgaggtcaaaactcacacagttcactt 380
Query: 181 tggtaaatccacaaaagatcaataaaattatcagcttcctaaaaaataaaatgggcacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtaaatccacaaaagatcaataaaattatcagcttcctaaaaaataaaatgggcacat 440
Query: 241 ttcctggaacaaaaagattacaaaatacttgcagacccacagaaaaaccgatgctcttga 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctggaacaaaaaggttacaaaatacttgcagacccacagaaaaaccgatgctcttga 500
Query: 301 gtcagcaagctctcccttgctccctgttagagtccttgctatgtttgagcctgcacctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gtcagcaagctctcccttgctccctgttagagtccttgctatgtttgagcctgcacccca 560
Query: 361 tccagggagtgctgtgcaaagccaccaggagagtggagtcttgcagatacatttatcacg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 tccagggagtgctgtgcaaagccaccaggagagtggagtcttgcagatacatttatcatg 620
Query: 421 tcacagcatgagaatttaggttcagcttctctctccttgtcagaatgctaacttctctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacagcatgagaatttaggttcagcttctctctccttgtcagaatgctaacttctctgt 680
Query: 481 tagcatgtgccagggtgctttgtgaggactgttgtttaaaccaacacccaattgccagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcatgtgccagggtgctttgtgaggactgttgtttaaaccaacacccaattgccagat 740
Query: 541 tagaaattatcagactagagaatctttgagaatgttgaagagt 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagaaattatcagactagagaatctttgagaatgttgaagagt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
