Query= MSMg01no530_b03.b1 MSMg01no530_b03.b1 CHROMAT_FILE:
MSMg01no530_b03.b1 PHD_FILE: MSMg01no530_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:16 2005
(648 letters)
>mm_chr4_141812098_141813145
Length = 1048
Score = 661 bits (342), Expect = 0.0
Identities = 377/400 (94%), Gaps = 20/400 (5%)
Strand = Plus / Minus
Query: 4 ggaattctccagggtggccaagaaaaaagaggtcatgtggttttaccatagcaggatgat 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaattctccaggatggccaagaaaaaagaggtcatgtggttttaccatagcaggatgat 332
Query: 64 aaaggggagtctactgtccccagatgtgaacatgaagtctcactccaaagacagatgcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaaggggagtctactgtccccagatgtgaacatgaagtctcactccaaagacagatgcct 272
Query: 124 aagtgtgtaaacaccaggaccttgcatatcctcttcctcccagtcctcccagtcctccca 183
| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 271 acgtgtgtaaacaccaggaccttgcatatcctct---------tcctcccagtcctccca 221
Query: 184 gtcctcccagtcctcccccagatgcaaatcgtgatccag----ctatcagatcttgtctt 239
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 220 gtcctcccagtcctcccccagatgcaaatcgtgatccagttttctatcagatcttgtctt 161
Query: 240 ctttttcaagagaaat-------cccatcttttctgcaatatctcccaaatcttgaattt 292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 160 ctttttcaagagaaatcagaaaccccatcttttctgcaatatctcccaaatcttgaattt 101
Query: 293 tggcacctaatgagaattggggtttttcttttaattgcagggaaaacaaaatatgtctgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tggcacctaatgagaattggggtttttcttttaattgcagggaaaacaaaatatgtctgt 41
Query: 353 gagtcaagtgtgcgctgccagcttccagttctgagagctg 392
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 40 gagtcaagtgtgcactgccagcttccagttctgagagctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_b03.g1 MSMg01no530_b03.g1 CHROMAT_FILE:
MSMg01no530_b03.g1 PHD_FILE: MSMg01no530_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:16 2005
(411 letters)
>mm_chr4_141667938_141668748
Length = 811
Score = 764 bits (395), Expect = 0.0
Identities = 407/411 (99%)
Strand = Plus / Plus
Query: 1 agcatcctcccatcgaccaggtggttctggaaggcctgggaatactgggacaggccaatg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatcctcccatcaaccaggtggttctggaaggcctgggaatactgggacaggccaatg 260
Query: 61 tcattcagccaggccttggccacccagtgatggtccaggtcggcagctttggacaggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattcagccaggccttggccacccagtgatggtccaggtcggcagctttggacaggctg 320
Query: 121 aaaaggagacacagccagagagaggtgggagtggggaaagagccagaggcaggggcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaggagacacagccagagagaggtgggagtggggaaagagccagaggcaggggcaggt 380
Query: 181 ggaaatggggtcagagatgggcagagaggaccaaaagcaggacagggagtagacaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaatggggtcagagatgggcagagaggaccaaaagcaggacagggagtagacaagaaa 440
Query: 241 gccagagaggccgatggagaaagtgatggagcagagggatagaggggaagaaaacaacga 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccagagaggccgatagagaaagtgatggagcagagggatagaggggaagaaaacaacga 500
Query: 301 caggctcagagatgtgtggagagtgaaagagagcaagagagggagggagagagagagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 501 caggctcagagatgtgtggagagtgaaagagagcaagagagggagggagggagggagaga 560
Query: 361 gagagagagagagagagagagagagagagagagagagagagagagagagag 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagagagagagagagagagagagagagagagagagagagagagagagag 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 136
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
