Query= MSMg01no530_e12.b1 MSMg01no530_e12.b1 CHROMAT_FILE:
MSMg01no530_e12.b1 PHD_FILE: MSMg01no530_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:32 2005
(718 letters)
>mm_chr4_37593618_37594733
Length = 1116
Score = 1164 bits (602), Expect = 0.0
Identities = 649/666 (97%), Gaps = 6/666 (0%)
Strand = Plus / Minus
Query: 5 gaattccactggactgctgggcctagagccaagttccagtgaagagctctagtatgaaaa 64
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 662 gaattccactagactgctgggcctagagccaagatccagtgaagagctctagtatgaaaa 603
Query: 65 gaggccacaaatggcttgttgcatagacataaaaatgtgttcaaagagtacatttccagc 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaggccacgaatggcttgttgcatagacataaaaatgtgttcaaagagtacatttccagc 543
Query: 125 cgtgaagtccagtacctaaatgttgcattgacctgcaatgttgtgggactgggtagcctt 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 catgaagtccagtacctaaatgttgcattgacctgcaatgttgtgggactgggtagcctt 483
Query: 185 aaataccaactatactttaacctccattccgtgacatcagttactgtttgtttttcttct 244
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 482 aaataccaactatactttaacctccatttcgtgacatcagttattgtttgtttttcttct 423
Query: 245 tcagtcattactgtgtgagtagctaagacaatgtaacc-taagcattgaatttaatgagt 303
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 422 tgagtcattactgtgtgagtagctaagacaatgtaaccttaagcattgaatttaatgagt 363
Query: 304 tcaatggccttctaattttctagaagaaatcatatga-tcgaaacttctaatgtttgaat 362
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 362 tcaatggccttctaattttctagaagaaatcatatgattc-aaacttctaatatttgaat 304
Query: 363 ttatggctaaacctgttgcttaaataaaaaaaaatatgagttaacgtaaggtcatttact 422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 303 ttatggctaaacctgttgcttaaat---aaaaaatatgagttaacgtaaggtcatttact 247
Query: 423 ataactaaatgaaatatgagcatacattaagacatgtcatattatgcacacccatatatg 482
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 ataactaaatgaaatatgagcatactttaagacatgtcatattatgcacacccatatatg 187
Query: 483 tacatatatgtttatctgtaagaatatatcaacatattatctatttagtttttacatatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tacatatatgtttatctgtaagaatatatcaacatattatctatttagtttttacatatt 127
Query: 543 gatgtgtttgtgtatgcatatgcataacctcatttgtatatgtgtgccatggtactaatt 602
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 126 gatgtgtttgtgtatgcatatgcataaccacatttgtatatgtgtgccatggtactaatt 67
Query: 603 tggaggcccaattgcaatttgttgcagtctcttccctccttcttccacatggaaacaatt 662
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 66 tggaggcccaattgcaatttgttgcagtctgttccctccttcttccacatggaaacaatt 7
Query: 663 gattga 668
||||||
Sbjct: 6 gattga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1116
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1106
Effective search space: 783048
Effective search space used: 783048
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_e12.g1 MSMg01no530_e12.g1 CHROMAT_FILE:
MSMg01no530_e12.g1 PHD_FILE: MSMg01no530_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:32 2005
(672 letters)
>mm_chr4_37387680_37388749
Length = 1070
Score = 1197 bits (619), Expect = 0.0
Identities = 659/673 (97%), Gaps = 4/673 (0%)
Strand = Plus / Plus
Query: 1 tttaactgagctattctcccagtctttcaaataattatgttttaagaaatcttaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaactgagctattctcccagtctttcaaataattatgttttaagaaatcttaaaaaaa 260
Query: 61 aaacaaaactaaaattcaagagaaaatcatctagttctgtcatgtgtgtaaaaggcaatt 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aa--aaaactaaaattcaagagaaaatcatctagttctgtcatgtgtgtaaaaggcaatt 318
Query: 121 tctatatgtcaagtttgaaagacacattatgtgtctctcatcaaatatgaacatataaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctatatgtcaagtttgaaagacacattatgtgtctctcatcaaatatgaacatataaat 378
Query: 181 ggttatatgtcttttatcaaatataaataacatgtttgtatgaactttttatgagctagt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 ggctatatgtcttttatcaaatataaataacatgtttgtatgaactttttatgtgctagt 438
Query: 241 aatgtcaataatctatgcagaaatattttcttagttgtttctttttaccttctctttttg 300
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgtcaatattctatgcagaaatgttttcttagttgtttctttttaccttctctttttg 498
Query: 301 aagcttctgtaatgtagtagagtttataaacagcattcattctaaaatatttggctttct 360
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 499 aagcttctgtaatgtagtagagtttataaacagcattaattctaaa-tatttggctttct 557
Query: 361 aaaagaaacctgacatttttctaagctttgaaagaaaataaaaccattaacatattcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaaagaaacctgacatttttctaagctttgaaagaaaataaaaccattaacatattcaag 617
Query: 421 gctctgacataggctaattttatcaaaatatcctatcataaggaaatttaaattaaacat 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 618 gctctgacataggctaattttatcaaaatatcctatgataaggaaatttaaattaaacat 677
Query: 481 atttgttcagacccttggatactgaatcattaaattgtcagaatagtagaactttttttt 540
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 678 atttgttcagacccttagatactgaatcattaaattgtcagaatagtagcactttttttt 737
Query: 541 -actgttcttcaaatatagacctattttgcctctcttaaaaaggtaaacgatatttgact 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 738 tactgttcttcaaatatagacctattttgcctctcttaaaaaggtaaaggatatttgact 797
Query: 600 tatttttgacctaatgaatcagctgaataatagatttttattatacaaattattcttaag 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 798 tatttttgacctaatgaatcagctgaataatagatttttattatacaatttattcttaag 857
Query: 660 aataaatttgcct 672
|||||||||||||
Sbjct: 858 aataaatttgcct 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
