BAC Information

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BAC

Clone NameMSMg01-530G12
Chromosome4 (Build37)
Map Location 134,152,687 - 134,300,145
singlet/doubletdoublet
Overlap geneMan1c1
Upstream geneSfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530G12.T7 (MSMg01no530_g12.b1)MSMg01-530G12.TJ (MSMg01no530_g12.g1)
ACCAG599052AG599053
length765771
length of high quality
(start - end)		715 (51 - 765)640 (75 - 714)
definitionCHROMAT_FILE: MSMg01no530_g12.b1 PHD_FILE: MSMg01no530_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:43 2005CHROMAT_FILE: MSMg01no530_g12.g1 PHD_FILE: MSMg01no530_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,299,434 - 134,300,145)(134,152,687 - 134,153,326)
sequence
GACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCCTTCTTTTTTCCCCCATAATTTGAAAAGACACTCAACAAGCT
CATCTTTCGGTTTAAATTTGGCCAACGCCTTTAGTCTCCGGATGTCTCAA
ATTATGGATCCTGAGCGCAGCCGTCTGCTCTTTCATGCATAACAGGCATA
GTGAAAGAACAAAGCTGCCTTTCAGACTTGATGTGACCTTCAGCTTCTCT
GGGTGCATGTTGGGCTGGCTCTCCAGGAGACGCTGTCACAATTACACCTT
GCAGAGGGGCTTCCCAGCTTCCGTGCCTGGGACAGGCTGGAGACTGGGCT
TCCCCTGCCTGGTGCAGCAGAACAGGCAACCTGCTTGGCTAGTAGGAAGG
ACTACTAACCTTGTCAGGACCCTTGTGCCCAGCCTTGGCGAGATCAGTCT
GCTGTGGCACACTGGGAGGTGGGTGGTAGTAGTAGTAGGTAGTCTTAGAA
CTATTAAAAAAAAAGTGACTTTCATTTATTCTTTGACAATTTTATAGATG
TAAACAGTGTCTTGATCCTGTGTACCCCCAACTCAACCCTCCTCCTCCCA
GGACCCCCAACACATTCCTTGTGCCACCTTTCTTTTTTCCTTCTTTGTAA
CCCAGAGTACAGTTAGTCCTGCCTGTTGGAATGTTGGCTGGTCCTGCTGG
CTTTATCCTGTGTAGGTAGTCATGGCCGTGGTGAGTTCTTGACTGTGCTG
TCTATATCCCGTCTA

ACCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCCCATGTGGCCTTAACTGCTTA
CTTGTGCTGGCAGTGCCCATGGAGAACCCTGAACTGGATCATGGGAAGGC
GTGGTGTGATACAGGCACAGCCTGAAAAAGAACTAGAGAGAAGAAGAGCG
AGGGAGGAGTGGGGTAAAGGCAGGGACAGCTGTTACAGGCATATCACAGA
AGGGAGGGCTGGCCACAGAGGAAGGGGTGCATCTGGGTGCTTGGACTAGG
GCTTAAGCTGGCGTGGAGCGTGTCTGCCCCTCCCACAGCCATGAAGCCAG
TCAGGTATTCCTTTCCCGGCCACCTCCCTTCTAAAAGGTGCCAGGGCAGG
CAAGGTTCCAGCAAGGCCCCACACTGAAGGACCTGGTGACATGGGGCCCT
GTGTTTGAAGGGTCTGGAGGGACTCTGAGGTCCTTCTAGGTCACTCATTC
ATCTCACAGATGAGGCCCTATCAAGGACTAAGCCAGCCCAGGGGTGATAA
GCTTCCACTGCCAGGGTGGCCTCTCAACTCTGAGCAAAGGGACCTACCCG
CTCACCCAACCTAGCACTCAGCTCCAGGCCAGGACTGGGAGGAAGCTCAG
TCCTTTCCCCCAGGGCACGGCAAGGTCTCTGATTTCAGATTCCTGCCCTG
GGCCACCTGTTCACCTCAATGGCCTCTGTCTCTTGGAGCTCAACCAGGGC
TCCTCATGACCAGCTGTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_g12.b1 MSMg01no530_g12.b1 CHROMAT_FILE:
MSMg01no530_g12.b1 PHD_FILE: MSMg01no530_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:43 2005
         (715 letters)



>mm_chr4_134299232_134300345
          Length = 1114

 Score = 1317 bits (681), Expect = 0.0
 Identities = 705/713 (98%), Gaps = 1/713 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattccttcttttttcccccataatttgaaaagacactcaacaagctcatctttcggtt 62
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 914 gaattccttcctttttcccccataatttgaaaagacacccaacaagctcatctttcggtt 855

                                                                       
Query: 63  taaatttggccaacgcctttagtctccggatgtctcaaattatggatcctgagcgcagcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 taaatttggccaacgcctttagtctccggatgtctcaaattatggatcctgagcgcagcc 795

                                                                       
Query: 123 gtctgctctttcatgcataacaggcatagtgaaagaacaaagctgcctttcagacttgat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gtctgctctttcatgcataacaggcatagtgaaagaacaaagctgcctttcagacttgat 735

                                                                       
Query: 183 gtgaccttcagcttctctgggtgcatgttgggctggctctccaggagacgctgtcacaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gtgaccttcagcttctctgggtgcatgttgggctggctctccaggagacgctgtcacaat 675

                                                                       
Query: 243 tacaccttgcagaggggcttcccagcttccgtgcctgggacaggctggagactgggcttc 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 674 tacaccttgcagaggggcttcccagcttccgtgcctgggacaggctggagactgggttta 615

                                                                       
Query: 303 ccctgcctggtgcagcagaacaggcaacctgcttggctagtaggaaggactactaacctt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccctgcctggtgcagcagaacaggcaacctgcttggctagtaggaaggactactaacctt 555

                                                                       
Query: 363 gtcaggacccttgtgcccagccttggcgagatcagtctgctgtggcacactgggaggtgg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtcaggacccttgtgcccagccttggcgagatcagtctgctgtggcacactgggaggtgg 495

                                                                       
Query: 423 gtggtagtagtagtaggtagtcttagaactattaaaaaaaaagtgactttcatttattct 482
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct: 494 gtggtagtagtagtaggtagtcttagaactatttaaaaaaaa-tgactttcatttgttct 436

                                                                       
Query: 483 ttgacaattttatagatgtaaacagtgtcttgatcctgtgtacccccaactcaaccctcc 542
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttgacaagtttatagatgtaaacagtgtcttgatcctgtgtacccccaactcaaccctcc 376

                                                                       
Query: 543 tcctcccaggacccccaacacattccttgtgccacctttcttttttccttctttgtaacc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcctcccaggacccccaacacattccttgtgccacctttcttttttccttctttgtaacc 316

                                                                       
Query: 603 cagagtacagttagtcctgcctgttggaatgttggctggtcctgctggctttatcctgtg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagagtacagttagtcctgcctgttggaatgttggctggtcctgctggctttatcctgtg 256

                                                                
Query: 663 taggtagtcatggccgtggtgagttcttgactgtgctgtctatatcccgtcta 715
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taggtagtcatggccgtggtgagttcttgactgtgctgtctatatcccgtcta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1114
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1104
Effective search space:   778320
Effective search space used:   778320
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no530_g12.g1 MSMg01no530_g12.g1 CHROMAT_FILE:
MSMg01no530_g12.g1 PHD_FILE: MSMg01no530_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:43 2005
         (640 letters)



>mm_chr4_134152487_134153526
          Length = 1040

 Score = 1199 bits (620), Expect = 0.0
 Identities = 635/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcccatgtggccttaactgcttacttgtgctggcagtgcccatggagaaccctgaac 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcccatgtggccttaactgctcacttgtgctggcagtgcccatggagaaccctgaac 260

                                                                       
Query: 61  tggatcatgggaaggcgtggtgtgatacaggcacagcctgaaaaagaactagagagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatcatgggaaggcgtggtgtgatacaggcacagcctgaaaaagaactagagagaaga 320

                                                                       
Query: 121 agagcgagggaggagtggggtaaaggcagggacagctgttacaggcatatcacagaaggg 180
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agagggagggaggagtggggtaaaggcagggacagctgttacgggcatatcacagaaggg 380

                                                                       
Query: 181 agggctggccacagaggaaggggtgcatctgggtgcttggactagggcttaagctggcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggctggccacagaggaaggggtgcatctgggtgcttggactagggcttaagctggcgt 440

                                                                       
Query: 241 ggagcgtgtctgcccctcccacagccatgaagccagtcaggtattcctttcccggccacc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcttgtctgcccctcccacagccatgaagccagtcaggtattcctttcccggccacc 500

                                                                       
Query: 301 tcccttctaaaaggtgccagggcaggcaaggttccagcaaggccccacactgaaggacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccttctaaaaggtgccagggcaggcaaggttccagcaaggccccacactgaaggacct 560

                                                                       
Query: 361 ggtgacatggggccctgtgtttgaagggtctggagggactctgaggtccttctaggtcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtgacatggggccctgtgtttgaagggtctggagggactctgaggtccttctaggtcac 620

                                                                       
Query: 421 tcattcatctcacagatgaggccctatcaaggactaagccagcccaggggtgataagctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcattcatctcacagatgaggccctatcaaggactaagccagcccaggggtgataagctt 680

                                                                       
Query: 481 ccactgccagggtggcctctcaactctgagcaaagggacctacccgctcacccaacctag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccactgccagggtggcctctcaactctgagcaaagggacctacccgctcacccaacctag 740

                                                                       
Query: 541 cactcagctccaggccaggactgggaggaagctcagtcctttcccccagggcacggcaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cactcagctccaggccaggactgggaggaagctcagtcctttcccccagggcacggcaag 800

                                                   
Query: 601 gtctctgatttcagattcctgccctgggccacctgttcac 640
           |||||||||||||||||||| |||||||||||||||||||
Sbjct: 801 gtctctgatttcagattcctaccctgggccacctgttcac 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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