Query= MSMg01no530_i11.b1 MSMg01no530_i11.b1 CHROMAT_FILE:
MSMg01no530_i11.b1 PHD_FILE: MSMg01no530_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:53 2005
(643 letters)
>mm_chr4_102871091_102872132
Length = 1042
Score = 1077 bits (557), Expect = 0.0
Identities = 612/643 (95%), Gaps = 21/643 (3%)
Strand = Plus / Plus
Query: 21 cacttgttttaccagaacaccaaagcctaaaaataagagatgtatgtatgtatgtatgta 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttgttttaccagaacaccaaagcctaaaaataagagatgtatgtatgtatgtatgta 260
Query: 81 tgt--------------------ggaagaaatactataggatctcaaaaaaatcaacctg 120
||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatgtatgtatgtatgtatgtggaagaaatactataggatctcaaaaaaatcaacctg 320
Query: 121 tgtggttcacagagtgatcctaggaaaaacaaaacaaaacaaaaacctcagtaagttgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggttcacagagtgatcctaggaaaaacaaaacaaaacaaaaacctcagtaagttgga 380
Query: 181 ctagagagatggctcaggggttaagagcactgactgctcttccagaggtcctgagttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagagagatggctcaggggttaagagcactgactgctcttccagaggtcctgagttcaa 440
Query: 241 ttcccagcaaccacatggtggctcacaaccagctgctacagggatctaatgccctcttct 300
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 441 ttcccagcaaccacatggtggctcacaaccagctgcaacagggatccaatgccctcttct 500
Query: 301 gatgtgtctcatagtgtactcacatatataaaataaacaaatcttaaaaaacaatcagta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gatgtgtctcatagtgtactcacatatataaaataaacaaatcttaaaaaacgatcagta 560
Query: 361 agtcttaacagactaagtaaggagactagaaggctttaatcctaagccatgaaagtaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcttaacagactaagtaaggagactagaaggctttaatcctaagccatgaaagtaatg 620
Query: 421 cttagtaattacttagagctggacagcaactttcccttgaactgaggcaggccactcaag 480
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 cttagtaattacttagacctggacagcaactttcccttgaactgaggcaggccactca-g 679
Query: 481 tgcaacctagagaagacatcagtcaatgcactgggcgacctactgcaatggcctagtgag 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgcaacctagagaagccatcagtcaatgcactgggcgacctactgcaatggcctagtgag 739
Query: 541 agccacagcagaggctttcttgcataggtaacaaagaacaccccgcagtgctgccaggaa 600
||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 agccacagcaggggctttcctgcataggtaacaaagaacaccccgcagtgccgccaggaa 799
Query: 601 gctagcaagtcttgccactctccttgctggctttgtgctgcag 643
||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 800 gctagcaagccttgccactctccgtgctggctttgtgctgcag 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1042
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1032
Effective search space: 653256
Effective search space used: 653256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_i11.g1 MSMg01no530_i11.g1 CHROMAT_FILE:
MSMg01no530_i11.g1 PHD_FILE: MSMg01no530_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:53 2005
(605 letters)
>mm_chr4_103044159_103045163
Length = 1005
Score = 1131 bits (585), Expect = 0.0
Identities = 597/601 (99%)
Strand = Plus / Minus
Query: 5 actctatcaaactgcccagtgttgagaattttatttgcttgaccagcacagttgtccctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 actctatcaaactgcccagtgttgagaattttatttgcttgaccagcacagttgtccctg 746
Query: 65 gtatataattcctggaccttggactgaccctagcagaacaagtggcaagaagaccttagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtatataattcctggaccttggactgaccctagcagaacaagtggcaagaagaccttagg 686
Query: 125 cttaggaagacaggcattgaagccttcccatctactaatgtatgatatatgtcaattaat 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttaggaagacaggcactgaagccttcccatctactaatgtatgatatatgtcaattaat 626
Query: 185 taataacttttcttaatcggttttctcatttgtagaatgaaaccatatgaccattagctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taataacttttcttaatcggttttctcatttgtagaatgaaaccatatgaccattagctc 566
Query: 245 attcatataaatactcctttgtataaggaagagaataatcaaataacagcagaataatga 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 attcatataaatactcctttgtataagggagagaataatcaaataacagcagaataatga 506
Query: 305 aaatattaaacacctcattatgtgagatatttacattggtggaaataccagtgccagccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatattaaacacctcattatgtgagatatttacattggtggaaataccagtgccagccc 446
Query: 365 agccacttagtgatgttgggacagcatctcatggagtacacagatacacacaagattttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agccacttagtgatgttgggacagcatctcatggagtacacagatacacacaagattttc 386
Query: 425 aggcttagactccaagcaaagacagccttgtccatggcttcccttaagagtgaagaagaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcttagactccaagcaaagacagccttgtccatggcttcccttaagagtgaagaagaa 326
Query: 485 aacactgcctctgaaaaacatttgctttatttcttattggccaatctagtactcgttgct 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 aacactgcctctgaaaaacatttgctttatttcttattggccaatctagtactcattgct 266
Query: 545 tctagatcagctactggctggcaaagagcactgcactcatgattcgttttcttgggcagg 604
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctagatcagttactggctggcaaagagcactgcactcatgattcgttttcttgggcagg 206
Query: 605 a 605
|
Sbjct: 205 a 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
