NTGTTAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTCAGACTATCAAATAAGACCTAATATCAATACTCT
TCAAACTATTCCACAAAATAGAAACAGAAGGAACACTACTGAATTCATTC
TATGAAGCTGATACCAAAACCTCACAAAGAAAGAGAACTTCAGACTAATT
TCCCTTATGAATATTGATGCAAAAATACTCAATAAAATTTTTACAAATCG
AATCTAAATCAAGAAAACATTAAAATGATCATCTATCATGATCAAGTAGG
CTTCATCCCAGGGATGCAGGGATGGCTCAATATATGGAAATGCATAAATG
TAATCCCACTATATAAATAAACTCAAAGAAAAAAACTACTTGATCATTTC
CTTTAGATGCTGAAGAAAGCATTTTGAGCAAAATGCCGCCCCCCCCTTCG
TGAAAAAAGTTCTTGGAAAAATCACGGAATTCCAGGGCCCCCTTCCCTCT
AAACCTTTTTTTAAAAAGAGGGAAAAAAAAGCGAAACCCCGTGGCCCCCA
CCTCTCGGGTTATAAGGAAAGAAAAAATTTGTGGGGAATTTTTCCCCCCT
TTAAAAAACAGGGGGGGGGAAAAAAGGGGGGGGGGCGCCCCCCCCCCTCC
CCCCCCCATTATTTTTCCATTAACCCCGGGGGGGGGGGTTATTTTCTTTA
TAGGAAAGAGACTCTTTTTTTC

GCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAGTGCTCTCAAAACTGTCTATTG
AGGCTGGCGGGATGGCTCAGTGAGCAAGGACAGTGGCTGCAGCTGCACAG
GCATGACAGCCTGGGGCTCAGACACTAGCCCTTACATACAAAGCCAGGTG
TGGCTGTCTGCACCTGGAACCCAGTGCGGTCAGGGGCAGAGAAGGAAGGC
TCATTGGTACTTACTGTCTACCAGCCTAGTTCCAGGTTCAATGAAAGACC
CTATCAAGCAAGTATGACAGTGAATAACAGAGACGATAGTTGATGGCTTT
GGCTTCTCACATAGAAGGTCACACACACACACACACACACACACACACAC
ACACACACACAGCAGATCATTTCTCTCAAGTATGTGTATGTGCCATTGGA
CATAGCCTTAAATTTTCATTTGTAAGATACAGAGAAGAAATAAAACTTGA
AAGCTTAGAGGCAGAGGAAGAGAAGCATAAAACCATACATACCCTCTCCT
TAAGGACATTTACAACCAGGATGAAGCTGGATCCACTTGCTACCTCAGGC
CCCAGTTAGAGAGGCAGAGGTCAAATAGTCAGATGAGTAAACCACAAGGA
GACAATCATTAGTTTCTGTCAAAAAAGCTCACAAGTGCCACATCTCCCTT
CACCGAGCTTCTGTCCTGAATTCCCAGTTCACGCACAATCCAAAGAGAGT
GAGAAAGCCCCCTTTCTCCCCCTCT

Query= MSMg01no530_i14.g1 MSMg01no530_i14.g1 CHROMAT_FILE:
MSMg01no530_i14.g1 PHD_FILE: MSMg01no530_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:53 2005
         (647 letters)



>mm_chr4_82236992_82238038
          Length = 1047

 Score = 1067 bits (552), Expect = 0.0
 Identities = 637/692 (92%), Gaps = 46/692 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtgctctcaaaactgtctattgaggctggcgggatggctcagtgagcaaggacagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 caaagtgctgtcaaaactgtctattgaggctggcgggatggctcagtgagcaaggacagt 216

                                                                       
Query: 61  ggctgcagctgcacaggcatgacagcctggggctcagacactag-cccttacatacaaag 119
           ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct: 217 ggctgcagctgcacaggcatggcagcctggggctcagacactagtccc-tacatacaaag 275

                                                                       
Query: 120 ccaggtgtggctgtctgcacctggaacccagtgcggtcaggggcagagaaggaaggctca 179
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acaggtgtggctgtctgcacctggaacccagtgcggtcaggggcagagaaggaaggctca 335

                                                                       
Query: 180 ttggtacttactgtctaccagcctagttccaggttcaatgaaagaccc--tatcaagcaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 336 ttggtacttactgtctaccagcctagttccaggttcaatgaaagaccctatatcaagcaa 395

                                                                       
Query: 238 gtatgacagtgaataacagagacgatagttgatggctttggcttctcacatagaagg--- 294
           |||||||||||||||||||||| || |||||||||||||||||||||||||||||||   
Sbjct: 396 gtatgacagtgaataacagagatgacagttgatggctttggcttctcacatagaaggtct 455

                                                                       
Query: 295 ---------------------tcacacacacacacacacacacacacacacacacacaca 333
                                || | ||||||||||||||||||||||||||||||||||
Sbjct: 456 ctctctctctctctctctctctctctcacacacacacacacacacacacacacacacaca 515

                                                                       
Query: 334 cacagcagatca------tttctctcaagtatgtgt------------atgtgccattgg 375
           ||| ||||||||      ||||||||||||||||||            ||||||||||||
Sbjct: 516 cactgcagatcattgctgtttctctcaagtatgtgtatgtacatatgcatgtgccattgg 575

                                                                       
Query: 376 acatagccttaaattttcatttgtaagatacagagaagaaataaaacttgaaagcttaga 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acatagccttaaattttcatttgtaagatacagagaagaaataaaacttgaaagcttaga 635

                                                                       
Query: 436 ggcagaggaagagaagcataaaaccatacataccctctccttaaggacatttacaaccag 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggcagaggaagagaagcataaaaccatacataccctctccttaaggacatttacaaccag 695

                                                                       
Query: 496 gatgaagctggatccacttgctacctcaggccccagttagagaggcagaggtcaaatagt 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gatgaagctggatccacttgctacctcaggccccagttagagaggcagaggtcaaatagt 755

                                                                       
Query: 556 cagatgagtaaaccacaaggagacaatcattagtttctgtcaaaaaagctcacaagtgcc 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cagatgagtaaaccacaaggagacaatcattagtttctgtcaaaaaagctcacaagtgcc 815

                                           
Query: 616 acatctcccttcaccgagcttctgtcctgaat 647
           |||||||||||||||||||| |||||||||||
Sbjct: 816 acatctcccttcaccgagctcctgtcctgaat 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)