Query= MSMg01no530_l20.b1 MSMg01no530_l20.b1 CHROMAT_FILE:
MSMg01no530_l20.b1 PHD_FILE: MSMg01no530_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:10 2005
(714 letters)
>mm_chr4_94915941_94917054
Length = 1114
Score = 1185 bits (613), Expect = 0.0
Identities = 622/625 (99%)
Strand = Plus / Minus
Query: 5 gaattctttgagaattttatatacaacactatgatacattcattccctcactcctcccag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattctttgagaattttatatacaacactatgatacattcattccctcactcctcccag 566
Query: 65 attcaccttgtctacacttacctccccacctaaccaacttcttcgtcttcttcatccttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attcaccttgtctacacttacctccccacctaaccaacttcttcgtcttcttcatccttt 506
Query: 125 ttccatccagcccagtttggaaatgtttttaagaaggacaacgggatagaatttcattgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 ttccatccagcccagtttggaaatgtttttaagaaggacaacgggatagaattccattgt 446
Query: 185 cttaaccaagttacttaatgtcttaggaaaaggatgggtaaaatggttgcaacttacgtg 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 445 cttaaccaagttacttaatgtcttaggaaaaggatgggtaacatggttgcaacttccgtg 386
Query: 245 acagctactttatcatgtggtaggtactttctacagttattcatagtcatcctgtggggt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagctactttatcatgtggtaggtactttctacagttattcatagtcatcctgtggggt 326
Query: 305 ttcacacatgaaaaaaacctaatggtccagaggtgaaataactattcctgcagctagaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcacacatgaaaaaaacctaatggtccagaggtgaaataactattcctgcagctagaag 266
Query: 365 acctatccaggtataacccaaactaatgtttttattgttgtttttagagttctattaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctatccaggtataacccaaactaatgtttttattgttgtttttagagttctattaaca 206
Query: 425 atgtggcagattgttagttgcctagtgaacatccactttgccctatgtactgagatagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atgtggcagattgttagttgcctagtgaacatccactttgccctatgtactgagatagga 146
Query: 485 aacttctgttctctgctggataaattgccacgtagaattaagacattgcctagtgttctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aacttctgttctctgctggataaattgccacgtagaattaagacattgcctagtgttctt 86
Query: 545 catagtcagtgatagtgtaggacaaacttccccccaatggcatgtgggaagtaaatgtaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 catagtcagtgatagtgtaggacaaacttccccccaatggcatgtgggaagtaaatgtaa 26
Query: 605 tgtctggtgggacacgcagggatgg 629
|||||||||||||||||||||||||
Sbjct: 25 tgtctggtgggacacgcagggatgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_l20.g1 MSMg01no530_l20.g1 CHROMAT_FILE:
MSMg01no530_l20.g1 PHD_FILE: MSMg01no530_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:10 2005
(544 letters)
>mm_chr4_94750704_94751647
Length = 944
Score = 977 bits (505), Expect = 0.0
Identities = 535/547 (97%), Gaps = 5/547 (0%)
Strand = Plus / Plus
Query: 1 cttgttctacggtgactcagaagaaaccattccttccttaagttgctgctgccacagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cttgttctacggtgactcagaagaaaccattccttccttaagttgctgctgccacagcaa 259
Query: 61 ttcgaaaaggaaatcatacatacaactgccatacgtgccagaacatgagctgaggataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcgaaaaggaaatcatacatacaactgccatacgtgccagaacatgagctgaggataca 319
Query: 121 tttagtggatacatgtagtgggcagatagcagccattacatgtgctctatatgcatagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttagtggatacatgtagtgggcagatagcagccattacatgtgctctatatgcatagtc 379
Query: 181 tttaaattttggaataccttttctcttctgatcatgcatctcaaatagtgactttaacct 240
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 tttaaatttcggaataccttttctcttctgatcatgcatctcaagtagtgactttaacct 439
Query: 241 ttgaaagtttctctaactgcacccctttctagctttaaaatcttggccttatatttcaga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgaaagtttctttaactgcacccctttctagctttaaaatcttggccttatatttcaga 499
Query: 301 gtaaacgtttataggtgtcctgtaaaaggtggaatcaaacacttaacaatacttgttgtt 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaaatgtttataggtgtcctgtaaaaggtggaatcaaacacttaacaatacttgttgtt 559
Query: 361 tgtttctatgtgatccaagagggaagaagccagggcttaaatctgaaggtgtagaaaaaa 420
||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct: 560 tgtttctatgtgatccaagaggggagaggccagggctta--tctgaaggtgtagaaaaaa 617
Query: 421 ttaaaaaaaaaaaaaaaaaagaa---gtgtgagtcacagccctaactctgaaagagttta 477
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 618 ttaaaaaaaaaaaaaaaaaaaaaaaagtgtgagtcacagccctaactctgaaagagttta 677
Query: 478 cagaatggtttgttagccagagctgaattctagaagggtaggcaaagcacttgatataaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cagaatggtttgttagccagagctgaattctagaagggtaggcaaagcacttgatataaa 737
Query: 538 aagaggt 544
|||||||
Sbjct: 738 aagaggt 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
