BAC Information

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BAC

Clone NameMSMg01-530P11
Chromosome4 (Build37)
Map Location 106,202,543 - 106,361,855
singlet/doubletdoublet
Overlap geneDhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027
Upstream geneLOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61
Downstream geneBC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530P11.T7 (MSMg01no530_p11.b1)MSMg01-530P11.TJ (MSMg01no530_p11.g1)
ACCAG599480AG599481
length768776
length of high quality
(start - end)		586 (47 - 632)626 (78 - 703)
definitionCHROMAT_FILE: MSMg01no530_p11.b1 PHD_FILE: MSMg01no530_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:27 2005CHROMAT_FILE: MSMg01no530_p11.g1 PHD_FILE: MSMg01no530_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,202,543 - 106,203,126)(106,361,230 - 106,361,855)
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCGCGG
AATTCTCTGGTCAGTTTCCGCCCTCTGGCGGGCAGGGAGAGCAACCCAGC
TCCTCACTTCCACTTGTTGTCTGTGCTGCCACCTGGTGGCCTCTCGGTGA
CAGCTTTTACTTTTCACCCCTGGGCTCGAGGGTTTGAAAAATTTGGAGTC
AAACGAACCTTAGTGGACCGAATCCTAGTAATCTTCCCATTGTACTTATA
AAACATATATCCAAGAGATAAACAGCAAGGGCCACTAGTATACACCCACT
AAGCTTCAGTCGCCATCAGAGCATCACTTCCAGTGGCCTATGACTCCCTC
CTGGGGGCAGGTGTACGATTTGGAAACACTGCTTAACAACCCCGTCCCAT
TCTTGCCCGTACAGGGCAGCCAATTAAGTAAGTTCTCACAGCATCTGCTT
TGCGCTCCAGCACTGCGCTGACAGCATCCACACTGTATGAAACAGAACCG
GCCCTCACTCTCACACAGCATACAGGTTCCGGCCTGAGACAGACCTTATC
AAACAGTCCTGAAAACTGAGTGTGGTGGTGCTCGCCAGCAATCTCCACAC
TTGGGAGTACATCTGACAGCAATGAGGAACCAGGAATGTGCAGTAGGTAC
CAGTTTGACACCGGAGCCTTTGTTTCAAAAGAATTCCCAGTGCTACCTGG
AGAATGAGTCAGAGTAGGTACAAGTGACTTCAAGGTTACTATGGGACCCA
GGAAGTTGACGAATAAAG

NCCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTGATTCTTCTGTCTCATTG
TCCTGAGTGCTGGGATTATAGATATATGCCACCATGCCTGACTTCTGGCT
CCCTTTTCTGCACTAGAAATTCCCATGCAGTGTTCTAGTGACAGGAGTCT
TATCAGGATGTCCACAGGGTAGGGACTCTGGGGGAGGGGGCTGGGAGTGC
TGGAAATGCTGAGTGCTTTCACTGACCCTGCAGATTTGCAGTGGCCCCAG
AATGGCTTGGGAAGTGCTCTGTGCTGAGGACCAGCATTTGTGGTCATTGA
ACTCTATATTGCCCAGTGATCTCTGAAATAGCTAAGCAGGAAGTAAGCGA
TGTACACTGTGAAGGTGTCACCGTGTGGGTCATAGAGCATCTGGGGGAGG
GGTGCTGTCTATCCCCACTGTCCCCTCCCTGTTGTCATGGACGTGGGAAA
TTACAGGAGGAGACCAGTTTAGGAAGCAGTCCTGATGACCTTGGCCCCTG
TGGAGGAAAGAGGAGGGGAGCAGGAAGGGAAAGATAAGGGAGGGGAAGGG
AAGAGAGGGCAGGGTGCAGGCAGCAGATGATTGTGTGGAGCTATAATAGG
GTTGCAGGGAGTTCTCAGACAATCCTCTACTGATTTTATTTCAACCTGGA
GCCAGAGACCAGGGCTCAGGTCATTTTTTGTTTTGTCGTTGAGATGGGGG
TCTCAACTCTGATTGTACAGGCAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_p11.b1 MSMg01no530_p11.b1 CHROMAT_FILE:
MSMg01no530_p11.b1 PHD_FILE: MSMg01no530_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:27 2005
         (586 letters)



>mm_chr4_106202341_106203326
          Length = 986

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctctggtcagtttccgccctctggcgggcagggagagcaacccagctcctcact 62
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctctggtcagcttccgccctctggcgggcagggagagcaacccagctcctcact 262

                                                                       
Query: 63  tccacttgttgtctgtgctgccacctggtggcctctcggtgacagcttttacttttcacc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccacttgttgtctgtgctgccacctggtggcctctcggtgacagcttttacttttcacc 322

                                                                       
Query: 123 cctgggctcgagggtttgaaaaatttggagtcaaacgaaccttagtggaccgaatcctag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctgggctcgagggtttgaaaaatttggagtcaaacgaaccttagtggaccgaatcctag 382

                                                                       
Query: 183 taatcttcccattgtacttataaaacatatatccaagagataaacagcaagggccactag 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 taatcttcccattgtacttataaaacatatatccaagagataaacagcaagggccactgg 442

                                                                       
Query: 243 tatacacccactaagcttcagtcgccatcagagcatcacttccagtggcctatgactccc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatacacccactaagcttcagtcgccatcagagcatcacttccagtggcctatgactccc 502

                                                                       
Query: 303 tcctgggggcaggtgtacgatttggaaacactgcttaacaaccccgtcccattcttgccc 362
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 tcctgggggcaggtgtacgatttggaaacactgcttaataaccccgtcccattcttgccc 562

                                                                       
Query: 363 gtacagggcagccaattaagtaagttctcacagcatctgctttgcgctccagcactgcgc 422
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtatagggcagccaattaagtaagttctcacagcatctgctttgcgctccagcactgcgc 622

                                                                       
Query: 423 tgacagcatccacactgtatgaaacagaaccggccctcactctcacacagcatacaggtt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgacagcatccacactgtatgaaacagaaccggccctcactctcacacagcatacaggtt 682

                                                                       
Query: 483 ccggcctgagacagaccttatcaaacagtcctgaaaactgagtgtggtggtgctcgccag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccggcctgagacagaccttatcaaacagtcctgaaaactgagtgtggtggtgctcgccag 742

                                                       
Query: 543 caatctccacacttgggagtacatctgacagcaatgaggaacca 586
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caatctccacacttgggagtacatctgacagcaatgaggaacca 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_p11.g1 MSMg01no530_p11.g1 CHROMAT_FILE:
MSMg01no530_p11.g1 PHD_FILE: MSMg01no530_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:27 2005
         (626 letters)



>mm_chr4_106361116_106362141
          Length = 1026

 Score = 1149 bits (594), Expect = 0.0
 Identities = 618/626 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtgattcttctgtctcattgtcctgagtgctgggattatagatatatgccaccatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acagtgattcttctgtctcattgtcctgagtgctgggattatagatatatgccaccatgc 681

                                                                       
Query: 61  ctgacttctggctcccttttctgcactagaaattcccatgcagtgttctagtgacaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgacttctggctcccttttctgcactagaaattcccatgcagtgttctagtgacaggag 621

                                                                       
Query: 121 tcttatcaggatgtccacagggtagggactctgggggagggggctgggagtgctggaaat 180
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 620 tcttatcaggatgtccacagggtggggactctgggggagggggctgggggtgctggaaat 561

                                                                       
Query: 181 gctgagtgctttcactgaccctgcagatttgcagtggccccagaatggcttgggaagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgagtgctttcactgaccctgcagatttgcagtggccccagaatggcttgggaagtgc 501

                                                                       
Query: 241 tctgtgctgaggaccagcatttgtggtcattgaactctatattgcccagtgatctctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgtgctgaggaccagcatttgtggtcattgaactctatattgcccagtgatctctgaa 441

                                                                       
Query: 301 atagctaagcaggaagtaagcgatgtacactgtgaaggtgtcaccgtgtgggtcatagag 360
            |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct: 440 gtagctaagcaggaagtaagccatgtacgctgtgaaggtgtcactgtgtgggtcatagag 381

                                                                       
Query: 361 catctgggggaggggtgctgtctatccccactgtcccctccctgttgtcatggacgtggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catctgggggaggggtgctgtctatccccactgtcccctccctgttgtcatggacgtggg 321

                                                                       
Query: 421 aaattacaggaggagaccagtttaggaagcagtcctgatgaccttggcccctgtggagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaattacaggaggagaccagtttaggaagcagtcctgatgaccttggcccctgtggagga 261

                                                                       
Query: 481 aagaggaggggagcaggaagggaaagataagggaggggaagggaagagagggcagggtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagaggaggggagcaggaagggaaagataagggaggggaagggaagagagggcagggtgc 201

                                                                       
Query: 541 aggcagcagatgattgtgtggagctataatagggttgcagggagttctcagacaatcctc 600
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aggcagcagatgataatgtggagctataatagggttgcagggagttctcagacaatcctc 141

                                     
Query: 601 tactgattttatttcaacctggagcc 626
           ||||||||||||||||||||||||||
Sbjct: 140 tactgattttatttcaacctggagcc 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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