BAC Information

Click to search

BAC

Clone NameMSMg01-531B16
Chromosome4 (Build37)
Map Location 145,752,509 - 145,753,207
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531B16.T7 (MSMg01no531_b16.b1)MSMg01-531B16.TJ (MSMg01no531_b16.g1)
ACCAG599586AG599587
length757761
length of high quality
(start - end)		701 (47 - 747)581 (77 - 657)
definitionCHROMAT_FILE: MSMg01no531_b16.b1 PHD_FILE: MSMg01no531_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:38 2005CHROMAT_FILE: MSMg01no531_b16.g1 PHD_FILE: MSMg01no531_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATTTTAGGTCAATCTAATATCCTCATCTGCCTGGCTGTTACCT
TGCTCTGAGCATTTCAGCCTAAACAGAGAGACCTCAGAGTGGTTTCAGAT
TGTGACCTTGAGTATATTGTGTGATATCTGGAGCTGGCTTTCATCATCTA
TGTCAATGCCAGTGAGAGGTGAAGTGGATATTACAGTCACCGTTTATAAT
TACAACAGGGCCACTAACTGAAGAGCAGTAATTCACTTCAACTGTCTATG
GCCACAGCCACACTGGGTGCTGCAGATTTTATTCCTGGAGTGTCTAAAGG
GTTTGTCCTCTTGATCTCCTTGCTGGGCCCTGACCTGTGCTCTCTGTCCA
GAATTAGCAATGAGGAATAAAGCCAGAATTGGTGTAGCTGGGGAGGAGAA
TCTCTTGAGTTTGGGGCCAACCTGATCTACAGAGAAAATTTCAGGACAGT
CAGGACTTCACAGAGAAACCTTATCCTTAACATTTCATGGCTGGTTGCTC
ACTCTAAAGCATGGTGAATCTGCTTTCCTCCTCTTGCATCTCTTAGCCTG
CCTATGGAAACCTAGAATTCCCACCTCTTCTTAGCCATTAGCAGCTAGCA
TCCTCATTGACTGATTAAAAACTAACTAGGTAACAGGAACTTCTGTGCTC
ACAAGCAGATTCCCATACAAAGCATCAGAACTACACCCTGCAGAGAAGAG
AGAGCAG

NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCTTACAAAT
GTAGTGAATGTGACAAATTCTTTACCCGAAAATTTCATCTTGATATTCAT
CAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAA
ATACTTTACTGAAAAAAGCAGGCTGAGAATTCATCAGAGAATTCATACAG
GAGAGAAACCTTACAAATGCAGTGAATGTGACAAATCCTTTACTGAAAAA
AACAGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAA
ATGCACTGAATGTGGCAAATGCTTTACTACAAAATGCCATCTGAGAATTC
ATCAGAGAATTCATACAGGAGAAAAACCTTACAAATGCAGTGAATGTGAC
AAATGCTTTACTACAAAAGGCCATCTGAGAATTCATCAGAGAATTCATAC
AAGAGAGAAACCTCACAAATGTAGTGAATGTGACAAATGCTTTACCCACA
AATCCCATCTTAATAATCATCAGAAAATTCATACAGGAGAGAAACCTTAC
AAATGCAGTGAATGTGACCAATGCTTTACTAGAAAAAGCAGTATGAGAAT
TCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTG
ACAAATGCTTTACTGAAAAAACAGTCTGAGAATCATCAGAGATTCATACA
GGAGAAAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_b16.b1 MSMg01no531_b16.b1 CHROMAT_FILE:
MSMg01no531_b16.b1 PHD_FILE: MSMg01no531_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:38 2005
         (701 letters)



>mm_chr4_145752306_145753407
          Length = 1102

 Score = 1230 bits (636), Expect = 0.0
 Identities = 684/700 (97%), Gaps = 3/700 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattc-cattttaggtcaatctaatatcctcatctgcctggctgttaccttgctctga 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacattttaggtcaatctaatatcctcatctgcctggctgttaccttgctctga 263

                                                                       
Query: 63  gcatttcagcctaaacagagagacctcagagtggtttcagattgtgaccttgagtatatt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcatttcagcctaaacagagagacctcagagtggtttcagattgtgaccttgagtatatt 323

                                                                       
Query: 123 gtgtgatatctggagctggctttcatcatctatgtcaatgccagtgagaggtgaagtgga 182
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 gtgtgatatctggagctggctttcatcatctatgtcaatgccagtgaaaggtgaagtgga 383

                                                                       
Query: 183 tattacagtcaccgtttataattacaacagggccactaactgaagagcagtaattcactt 242
           |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattacagtcactgtttagaatgacaacagggccactaactgaagagcagtaattcactt 443

                                                                       
Query: 243 caactgtctatggccacagccacactgggtgctgcagattttattcctggagt-gtctaa 301
           |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||
Sbjct: 444 caactgtctatggccacagccacactgggtgctgcagattttattcctgt-gttgtctaa 502

                                                                       
Query: 302 agggtttgtcctcttgatctccttgctgggccctgacctgtgctctctgtccagaattag 361
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 503 agggtttgtcctcttgatctccttgctggggcctgacctgtgctctctgtccagaattaa 562

                                                                       
Query: 362 caatgaggaataaagccagaattggtgtagctggggaggagaatctcttgagtttggggc 421
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caatgaggaatcaagccagaattggtgtagctggggaggagaatctcttgagtttggggc 622

                                                                       
Query: 422 caacctgatctacagagaaaatttcaggacagtcaggacttcacagagaaaccttatcct 481
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caacccaatctacagagaaaatttcaggacagtcaggacttcacagagaaaccttatcct 682

                                                                       
Query: 482 taacatttcatggctggttgctcactctaaagcatggtgaatctgctttcctcctcttgc 541
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taacatctcatggctggttgctcactctaaagcatggtgaatctgctttcctcctcttgc 742

                                                                       
Query: 542 atctcttagcctgcctatggaaacctagaattcccacctcttcttagccattagcagcta 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 743 atctcttagcctgcctatggaaacctagaattcccacctcttcttagccatgagcagcta 802

                                                                       
Query: 602 gcatcctcattgactgattaaaaactaactaggtaacaggaacttctgtgctcacaagca 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcatcctcattgactgattaaaaactaactaggtaacaggaacttctgtgctcacaagca 862

                                                   
Query: 662 gattcccatacaaagcatcagaactacaccctgcagagaa 701
           |||||||| |||||||||||||||||||||||||||||||
Sbjct: 863 gattcccaaacaaagcatcagaactacaccctgcagagaa 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1102
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1092
Effective search space:   754572
Effective search space used:   754572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |