Query= MSMg01no531_e04.b1 MSMg01no531_e04.b1 CHROMAT_FILE:
MSMg01no531_e04.b1 PHD_FILE: MSMg01no531_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:50 2005
(547 letters)
>mm_chr4_118200203_118201155
Length = 953
Score = 959 bits (496), Expect = 0.0
Identities = 534/552 (96%), Gaps = 12/552 (2%)
Strand = Plus / Plus
Query: 5 gaattcactttattc--gcctggtgcactaagcccagaaacccagcttcccagcccccaa 62
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttta--caagcctggtgcactaagcccagaaacccagcttcccagcccccaa 262
Query: 63 ccataggcatac-------acacagcctacccagccctctgcctcagggaagtgtgtggc 115
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccataggcctacccagcctacacagcctacccagccctctgcctcagggaagtgtgtggc 322
Query: 116 tggtaatggccagttctgactggatgctgaggagtcagaggtcacctgtagaccctggag 175
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 tggtaatggccagttctgactggatgctgaggagtcagaggtcacctgtggaccctggag 382
Query: 176 caacctcaccagccggaaggtctgatttgaataaaaactttgatttgaatgagagcccag 235
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 383 caacctcaccagccggaaggtctgatttgaatgaaaactctgatttgaatgagagcccag 442
Query: 236 aagtgaacatgcttggtctcggggtctcgtgctgggttttgagtcccccacacctaagaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagtgaacatgcttggtctcggggtctcgtgctgggttttgagtcccccacacctaagaa 502
Query: 296 gaggacatgtttggcatgtcggggagctgtagtcataggctctggttggcttcccgagtg 355
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaggacatgtt-ggcatgtcggggagctgtagtcataggctctggttggcttcccgagtg 561
Query: 356 gataggaggtggctagatgcctgttaggagatcgaagctggtggctagagggacaaagag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gataggaggtggctagatgcctgttaggagatcgaagctggtggctagagggacaaagag 621
Query: 416 taggtagcttggacaccgctgtggcagagggcagggaggagggctgagtcactggagaag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taggtagcttggacaccgctgtggcagagggcagggaggagggctgagtcactggagaag 681
Query: 476 gaggtggtgcatcttgagtcagggcatcctttgggtaccacattgaggagtgtggccaaa 535
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaggtggtgcatcttgagtcaggtcatcctttgggtaccacattgaggagtgtggccaaa 741
Query: 536 gctgggtccttc 547
|||| |||||||
Sbjct: 742 gctgagtccttc 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 953
Length adjustment: 10
Effective length of query: 537
Effective length of database: 943
Effective search space: 506391
Effective search space used: 506391
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_e04.g1 MSMg01no531_e04.g1 CHROMAT_FILE:
MSMg01no531_e04.g1 PHD_FILE: MSMg01no531_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:50 2005
(431 letters)
>mm_chr4_118266106_118266934
Length = 829
Score = 594 bits (307), Expect = e-174
Identities = 336/346 (97%), Gaps = 2/346 (0%)
Strand = Plus / Minus
Query: 86 ggcagctgagagttctacatctggatccacaggcagcaggaaaaaaagatagcgagctac 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 829 ggcagctgagagttctacatctggatccacaggcagcaggaaaaaaagatagcgtgctac 770
Query: 146 tagtcagacttgagcttctgagccctcaaaagcccaccatttcctccaacaaagtcacat 205
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 769 tagttagacttgagcttctgagccctcaaaagcccaccacttcctccaacaaagtcacac 710
Query: 206 ctactctaacaaggccacacctcctaataatgtcactctctagggacctatcaggggtca 265
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 709 ctactctaacaaggccacacctcctaataatgtcactctctagagacctatcaggggtca 650
Query: 266 tttttattcaaaccacctcagacaatgtttgcatatgatgccataggagaatttccggcc 325
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 649 tttttattcaaaccacctcagacaatgtttgcatatggtgccataggagaatttccggcc 590
Query: 326 attccattcgttttgttcctaacacccacaaccagttattagtcaagaagccaaagttga 385
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 589 attccattcgttttgttcctaacacccacaacc-gttattagtcaagaagccaaagttga 531
Query: 386 agggacagtggggtggaggtgtgaggggtggganctctggttgtgc 431
||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct: 530 agggacagtggggtggaggtg-gaggggtgggagcgctggttgtgc 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 829
Length adjustment: 9
Effective length of query: 422
Effective length of database: 820
Effective search space: 346040
Effective search space used: 346040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
