Query= MSMg01no531_h15.b1 MSMg01no531_h15.b1 CHROMAT_FILE:
MSMg01no531_h15.b1 PHD_FILE: MSMg01no531_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:06 2005
(584 letters)
>mm_chr4_46808617_46809599
Length = 983
Score = 988 bits (511), Expect = 0.0
Identities = 562/579 (97%), Gaps = 4/579 (0%)
Strand = Plus / Plus
Query: 5 gaattccctccgtgttc-ggttttctggaagtctgaggaacgttcatctctctcacaggc 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctccgtgg-caggttttctggaagtctgaggaacgttcatctctctcacaggc 263
Query: 64 caccctagaaccccggccacagctggcttgtgaagctagagactgaccagtttccagtca 123
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 caccctaaaaccccggccacagctggcttgtgaagctagagactgaccattttccagtca 323
Query: 124 gaactctgttactggggaccaggaggaggggagagaagaatgttgctatagacacagcta 183
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaccctgttgctggggaccaggaggaggggagagaagaatgttgctatagacacagcta 383
Query: 184 cctgcctaaccagccagtgtgtccccatagggcaccaacctcctcccgctgagctggcta 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 cctgcctaaccagccagtgtgtccccatagggcaccaacctcctccccctgagctggcta 443
Query: 244 ctctaccttgcactgtctcccagggcattagtcatatggaggctgtgtcgggtggggcat 303
||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 444 ctctaccctgcactgtctcccagggcattagtcatatggag-ctgtgttgggtggggcat 502
Query: 304 tagcactgtgaggctggctcctggattcccctgcctttccatgcccttctgtgcctctgt 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 503 tagcactgtgaggctggctcctggattcccctgcctttccatgcccttccgtgcctccgt 562
Query: 364 ttcagagcatggggtgggcatagtgacttgcccctccaaacctcccaccatttcccatca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcagagcatggggtgggcatagtgacttgcccctccaaacctcccaccatttcccatca 622
Query: 424 ctgtgtgtcaacgggaagtgtcaggactcaagggccgcagcccatgactgattcctgctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 ctgtgtgtcaacgggaagtgtcaggactcaagggccgcagcccatgactgagtcctgctg 682
Query: 484 ggcacaggaggtcctccctaggtgtgttggttg-tttttttgtcaacttgatacaagctc 542
||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 683 ggcacaggaggccctccctaggtgtgttggttggtttttttgtcaacatgatacaagctc 742
Query: 543 aggccatctggaaggaggggacatcaattgagaaactgc 581
|||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aggccatctggaaggaggggacatcaattgagaaactgc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_h15.g1 MSMg01no531_h15.g1 CHROMAT_FILE:
MSMg01no531_h15.g1 PHD_FILE: MSMg01no531_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:06 2005
(318 letters)
>mm_chr4_46979733_46980450
Length = 718
Score = 584 bits (302), Expect = e-171
Identities = 314/318 (98%)
Strand = Plus / Minus
Query: 1 tctggttttggtgcgttcgagatttgggatgtttggattagggaagctcaaactgtacca 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tctggttttggtgtgttcgagatttgggatgtttggattagggaagctcaaactgtacca 459
Query: 61 gaaccagcagtaaaagagtgtcatgagtgtgtggtcatggtgtggggtggaatcttccct 120
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaaccagcagtaaaggagtgtcaggagtgtgtggtcatggtgtggggtggaatcttccct 399
Query: 121 ctagaaggctgcagtgctctctgagatggtgctggagggaggctggctagaggaaatgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctagaaggctgcagtgctctctgagatggtgctggagggaggctggctagaggaaatgag 339
Query: 181 agctttgctggggctcaggacaaaggaaggctgcggggctgaggagagcagggccaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agctttgctggggctcaggacaaaggaaggctgcggggctgaggagagcagggccaagtc 279
Query: 241 agagagtgggtagggtcctcaagactatatggtagagggcattggaggagttggagcagg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agagagtgggtagggtcctcaggactatatggtagagggcattggaggagttggagcagg 219
Query: 301 gaggggatgtgatgcgcc 318
||||||||||||||||||
Sbjct: 218 gaggggatgtgatgcgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
