Query= MSMg01no531_h17.b1 MSMg01no531_h17.b1 CHROMAT_FILE:
MSMg01no531_h17.b1 PHD_FILE: MSMg01no531_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:07 2005
(569 letters)
>mm_chr4_149391617_149392585
Length = 969
Score = 536 bits (277), Expect = e-156
Identities = 326/351 (92%), Gaps = 14/351 (3%)
Strand = Plus / Minus
Query: 1 gccatgtcagcctctctttctcttgttggggactttgaaaacaagaagtcgtctctccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gccatgtcagcctctctttctcttgttggggactttgaaaacaagaagtcgtctctccag 284
Query: 61 gtcagttgggtctggatctgttttccttttaagaacccacactgatctccttattcagtg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 283 gtcagttgggtctggatctgttttccttttaagaacccacagtgatctccttattcagtg 224
Query: 121 ctggaaatcaaaacccagaacctcatacatgttaggtacacacatgctaggtacatacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctggaaatcaaaacccagaacctcatacatgttaggtacacacatgctaggtacatacat 164
Query: 181 gctaggtacatgcatgctaggtacgtgcatgctaagtacatacctactaggtacatacat 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 163 gctaggtacatgcatgctaggtacatgcatgctaagtacatacctactaggtacatacat 104
Query: 241 gctagatacatgcatgctaggtgcatctaggtacatacatgcatgctaggtacataccta 300
||||| |||||||||||||||| || ||||||||| |||||| ||||
Sbjct: 103 gctaggtacatgcatgctaggt--------------acgtgcatgctaagtacatgccta 58
Query: 301 ttaggtacatacatgctaggtacatacatgctaagtacatgcatgctaggt 351
|||||||||||||||||| ||||| ||||||| |||||| ||||||||||
Sbjct: 57 ctaggtacatacatgctagatacatgcatgctaggtacatacatgctaggt 7
Score = 182 bits (94), Expect = 6e-50
Identities = 115/122 (94%)
Strand = Plus / Minus
Query: 362 taggtacatgcatgctaggtacatacatgctaggtacatgcatgctaggtacatacatgc 421
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 191 taggtacacacatgctaggtacatacatgctaggtacatgcatgctaggtacatgcatgc 132
Query: 422 taggtacatacatgctaggtacatacatgctaggtacatgcatgctaggtacatgcatgc 481
|| |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 131 taagtacatacctactaggtacatacatgctaggtacatgcatgctaggtacgtgcatgc 72
Query: 482 ta 483
||
Sbjct: 71 ta 70
Score = 122 bits (63), Expect = 7e-32
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 383 catacatgctaggtacatgcatgctaggtacatacatgctaggtacatacatgctaggta 442
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 200 catacatgttaggtacacacatgctaggtacatacatgctaggtacatgcatgctaggta 141
Query: 443 catacatgctaggtacatgcatgctaggtacatgcatgctagg 485
||| ||||||| |||||| | | |||||||||| |||||||||
Sbjct: 140 catgcatgctaagtacatacctactaggtacatacatgctagg 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 5
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_h17.g1 MSMg01no531_h17.g1 CHROMAT_FILE:
MSMg01no531_h17.g1 PHD_FILE: MSMg01no531_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:07 2005
(586 letters)
>mm_chr4_149206333_149207318
Length = 986
Score = 1058 bits (547), Expect = 0.0
Identities = 573/583 (98%), Gaps = 4/583 (0%)
Strand = Plus / Plus
Query: 4 aactgctaccttactccacagccagtagaggccacagcaacacacctgatggccaggctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aactgctaccttactccacagccagtagaggccacagcaacacacctgatggccaggctg 263
Query: 64 gcctctgggcagccagggcagggcataacctctcagcagcagattctgtggaggctgtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcctctgggcagccagggcagggcataacctctcagcagcagattctgtggaggctgtca 323
Query: 124 gtcccaaactccagctggctctagccacaggtgcctggactttaatgtcacagtttattt 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcccaaactccagctggctgtagccacaggtgcctggactttaatgtcacagtttattt 383
Query: 184 ggaagaagattaaagctggtctgatgaaaggggacttctgagctttcagtcggaaagcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaagaagattaaagctggtctgatgaaaggggacttctgagctttcagtcggaaagcag 443
Query: 244 tttctgcagggcagccccgcctggtttgtctgtccatgtttgaaggcactgtagactcaa 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttctgcagggcagccccgcctggtttgtctgtccatgtttgaaggcactgtagactcaa 503
Query: 304 tactgtctggatgtctgctctgacctgcagcgctcctctaaatactgtgcccagggaaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tactgtctggatgtctgctctgacctgcagcgctcctctaaatactgtgcccagggaaac 563
Query: 364 aagccagacacaaaggctgcaggtcgggtggctccgtttatatgaaacgtctgaagcagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagccagacacaaaggctgcaggtcgggtggctccgtttatatgaaacgtctgaagcagg 623
Query: 424 cggagtcacagatgcacaccggaggttagcagctgctgggaagattggggggtgtgtgag 483
||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 624 cggagtcacagatacacaccggaggttagcagctgctgggtagattggggtgtgtgtgag 683
Query: 484 tagtgaccaccgcagacgggacgaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 543
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 tagtgaccactgcagacgggacgaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-gt 742
Query: 544 gttgttctggctacaggctgtgactatagtgaaatccactgag 586
||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtt---ctggctacaggctgtgactatagtgaaatccactgag 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
