BAC Information

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BAC

Clone NameMSMg01-531J20
Chromosome4 (Build37)
Map Location 115,513,234 - 115,513,827
singlet/doubletsinglet
Overlap geneMknk1
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c
Downstream geneKncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531J20.T7 (MSMg01no531_j20.b1)MSMg01-531J20.TJ (MSMg01no531_j20.g1)
ACCAG599971AG599972
length772782
length of high quality
(start - end)		612 (36 - 647)595 (77 - 671)
definitionCHROMAT_FILE: MSMg01no531_j20.b1 PHD_FILE: MSMg01no531_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:18 2005CHROMAT_FILE: MSMg01no531_j20.g1 PHD_FILE: MSMg01no531_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCCTGCACCTTTGTGCCTCTGGTGCCTGTAAGTAGGGCAACATCC
ATCTAACCAGGGCCCTCCTTAGCCATGAAGGAAAACATGAGGTCTCCTTC
TAATCTTGATGGCTTGTAAAACAAAGACCAAAGAGGGATAAAAAAAAAAA
AAAAGGCACTGACTCATTTGACCACAAGCATTACAGAGACCTACTATGTG
CCAGTCCTGTACCATGAAGAGCAGGTGTGACATAGACTTGGCTCCTTGCC
ACCAACTGTAGTCGGGGTACATATGAGTGATGTACCCCAAGACAGACTTT
GCTAAGACGTCTATAGGAAGCTCAGTCTCTGCTACAGGAGACTGGATTGG
GAGCATCTAACCAGCAGGAGGATGAGACGCGTCACCAAAGATGTGGTGTG
AGCACCCGTGAAGAAGCTGCAGAAGGTGCCATATTATTGAATAACTACAG
ACCACACAACAGGAGACCTAGCTAAACATGTGCTGCAATTTGCCAGCTTC
TTCTCAGAACTTCTCTCTCCATGGTTGGGTTGGCTGGTGCCAGGCCCTCT
GACTGCCAAATCTGCACTAGAGAAATGACACTCCTATGCAAGCCAAAGAC
CCTGGATTATAGAAAGAGGAACACTGAGGTGGAAACAGATGCTCGGAAGG
GGCTCCAAACTTCCTGGCTAGTTCACTTTTTTTTTTGGTTTTTCGAGACA
GGGTTTCTCTGTGTAGGCCTGG

NCCCATGCAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAAGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAATCACTCTGGAA
ATCAGTCTGGCGGATTTTCAGAAAATTGGACATAGTACTACAGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATCTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATGATCCTGAG
CGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATACAATTTG
CTAAACGCATGGAACTCAAGAAGAATGAAGACTGGAGTGTGGACACTATG
CCCCCTCCTAGAATTGGGAAACAAACACCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_j20.b1 MSMg01no531_j20.b1 CHROMAT_FILE:
MSMg01no531_j20.b1 PHD_FILE: MSMg01no531_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:18 2005
         (612 letters)



>mm_chr4_115513018_115514027
          Length = 1010

 Score = 1141 bits (590), Expect = 0.0
 Identities = 594/596 (99%), Gaps = 2/596 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcctgcacctttgtgcctctggtgcctgtaagtagggcaacatccatctaaccagg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gaattcctgcacctttgtgcctctggtgcctgtaagtagggcaacatccatctaaccagg 751

                                                                       
Query: 77  gccctccttagccatgaaggaaaacatgaggtctccttctaatcttgatggcttgtaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gccctccttagccatgaaggaaaacatgaggtctccttctaatcttgatggcttgtaaaa 691

                                                                       
Query: 137 caaagaccaaagagggataaaaaaaaaaaaaaaggcactgactcatttgaccacaagcat 196
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 caaagaccaaagagggat--aaaaaaaaaaaaaggcactgactcatttgaccacaagcat 633

                                                                       
Query: 197 tacagagacctactatgtgccagtcctgtaccatgaagagcaggtgtgacatagacttgg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tacagagacctactatgtgccagtcctgtaccatgaagagcaggtgtgacatagacttgg 573

                                                                       
Query: 257 ctccttgccaccaactgtagtcggggtacatatgagtgatgtaccccaagacagactttg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctccttgccaccaactgtagtcggggtacatatgagtgatgtaccccaagacagactttg 513

                                                                       
Query: 317 ctaagacgtctataggaagctcagtctctgctacaggagactggattgggagcatctaac 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctaagacgtctataggaagctcagtctctgctacaggagactggattgggagcatctaac 453

                                                                       
Query: 377 cagcaggaggatgagacgcgtcaccaaagatgtggtgtgagcacccgtgaagaagctgca 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cagcaggaggatgagacgcgtcaccaaagatgtggtgtgagcacccgtgaagaagctgca 393

                                                                       
Query: 437 gaaggtgccatattattgaataactacagaccacacaacaggagacctagctaaacatgt 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaaggtgccatattattgaataactacagaccacacaacaggagacctagctaaacatgt 333

                                                                       
Query: 497 gctgcaatttgccagcttcttctcagaacttctctctccatggttgggttggctggtgcc 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gctgcaatttgccagcttcttctcagaacttctctctccatggttgggttggctggtgcc 273

                                                                   
Query: 557 aggccctctgactgccaaatctgcactagagaaatgacactcctatgcaagccaaa 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggccctctgactgccaaatctgcactagagaaatgacactcctatgcaagccaaa 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1010
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1000
Effective search space:   602000
Effective search space used:   602000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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