NTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGTCCTTATAGACTTCATTCCAGGATTGTTTTTTGGTATGTA
TATACCTTTTCTGTCAATATTAGATAGCCTAATGATTCCTGGACATTAGC
CCTACCCTATTGTGCAGATTTTCTGTAAATTCACATAAAGATGTCCTCTC
AAGCAATATTGCTGAGTAGAAAAATTGATGAGCTCATAATTCCTGTTAAT
GGTTTTAAAGAATTCCTAAATGTACACAAGTAATTTTGAGCCCTCTATAG
AATTAAAGTTGCAAATATAGCTTTCTAAACCACCATGTACCATGAGCTAA
TTCCATTAGGATAAGAAAGCAGGGTTGGAACAAATTTATAATCAAGGAAA
ATATTCCTTCTATGTTAACTCTGAGACCACTATCTGGTAACTAAAGGTCA
TAAACTTGGAATGGACTATTTATTGTAGGTACAAAGACAAAAATACAATA
TTGATTAATTTATCTATACAAAACTAATAAGTAGGAAAATCATTTGACTC
TTGACAAAGCCATGCTAACTTGTGAATTAAAAATTATTGCTTTAAACTTA
TAGTGAAATTATGGTTCTAGGAACAGATAATGAATGTTTAGTCAAACACT
AGTCTTAATGGAAAGAAATGTAAACAATTCTGCTGTTATTCCTTACATCT
TACTGATCTGTGACTTTAATTATTGCCTTTAAATTATTATTAACTTATTG
GAAATGTAAAGTATTTAGAAAATCATGTAATCAATT

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTTGTCAAATTTAAATTGATTAC
TCAGAAACCTCATTAATTTTGTCATTTTGGCTGCTCTTTAACATACTACT
TGGAGATTTAAAATATTTTTCAAGATTTAAAAATATTGATTTATAATATT
TATATATGCTGATGTTTGTTCCCCGCAGTCCTTGTAGAACTGTGAACTCC
ATGCAGAACTCCTCGATTTCCTTTATTTCTCGATATTCTTGCTTCTTCAG
CACTCTAAATACTTAGGATGCTAGATCAGGTTAAAATTAAATTTATATCT
TCTGCATTGTTCTGTTTTTATATTAATATTTATTTCTTATTAATTTTTAT
ATGGTCATTCACTGCTTGTTTTCCAAACAACATGGAAAGATAATCAAATC
ATAGTAAAGTCTAATTTCTTTGGGCCAGTGAATTGAATGTTGTTCTAGTA
CAATCTAGAAAACTTTGAATACTCTCAGTAATATTTAAAAAAATACATGA
AGCCATTTTTAAGGATGAAGTCTCTCTTTTTGTTTTACCAGAAGATGATG
AAATGGTTACTAGGGAGAAAACAGTGATAAACTACAAGTTAAGCCATCAT
TAATTGTCCAAATCTCCAACAGAAGTCAATTCTGTATTTGCCCACTCTAT
ATAGCCTGAAAGGAATAAAATCTCTTTCCCCTTCCAAGTATAGAGATCAC
AGATGCAGGGCATTTAACAAAGGAAT

Query= MSMg01no531_k20.g1 MSMg01no531_k20.g1 CHROMAT_FILE:
MSMg01no531_k20.g1 PHD_FILE: MSMg01no531_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:23 2005
         (700 letters)



>mm_chr4_89757755_89758855
          Length = 1101

 Score = 1324 bits (685), Expect = 0.0
 Identities = 697/701 (99%), Gaps = 1/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttgtcaaatttaaattgattactcagaaacctcattaattttgtcattttggctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttgtcaaatttaaattgattactcagaaacctcattaattttgtcattttggctgc 260

                                                                       
Query: 61  tctttaacatactacttggagatttaaaatatttttcaagatttaaaaatattgatttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttaacatactacttggagatttaaaatatttttcaagatttaaaaatattgatttat 320

                                                                       
Query: 121 aatatttatatatgctgatgtttgttccccgcagtccttgtagaactgtgaactccatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatttatatatgctgatgtttgttccccgcagtccttgtagaactgtgaactccatgc 380

                                                                       
Query: 181 agaactcctcgatttcctttatttctcgatattcttgcttcttcagcactctaaatactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaactcctcgatttcctttatttctcgatattcttgcttcttcagcactctaaatactt 440

                                                                       
Query: 241 aggatgctagatcaggttaaaattaaatttatatcttctgcattgttctgtttttatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatgctagatcaggttaaaattaaatttatatcttctgcattgttctgtttttatatt 500

                                                                       
Query: 301 aatatttatttcttattaatttttatatggtcattcactgcttgttttccaaacaacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatttatttcttattaatttttatatggtcattcactgcttgttttccaaacaacatg 560

                                                                       
Query: 361 gaaagataatcaaatcatagtaaagtctaatttctttgggccagtgaattgaatgttgtt 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gaaagataatcaaatcatagtaaagtctaatttctttgagccagtgaattgaatgttgtt 620

                                                                       
Query: 421 ctagtacaatctagaaaactttgaatactctcagtaatatttaaaaaaatacatgaagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagtacaatctagaaaactttgaatactctcagtaatatttaaaaaaatacatgaagcc 680

                                                                       
Query: 481 attttt-aaggatgaagtctctctttttgttttaccagaagatgatgaaatggttactag 539
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attttttaaggatgaagtctctctttttgttttaccagaagatgatgaaatggttactag 740

                                                                       
Query: 540 ggagaaaacagtgataaactacaagttaagccatcattaattgtccaaatctccaacaga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagaaaacagtgataaactacaagttaagccatcattaattgtccaaatctccaacaga 800

                                                                       
Query: 600 agtcaattctgtatttgcccactctatatagcctgaaaggaataaaatctctttcccctt 659
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 801 agtcaattctgtatttgcccactcaatatagcctgaaaggaataaaacctctttcccctt 860

                                                    
Query: 660 ccaagtatagagatcacagatgcagggcatttaacaaagga 700
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccaagtatagagatcacagatgcagggcatttaacaaagga 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1101
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1091
Effective search space:   752790
Effective search space used:   752790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)