GGGGGGGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAG
GATCCGCGGAATTCAGGGTTGGTTCCCAGAATGTACATGGTGGCTTATAA
CCACATATAGTTAAATTCAGTTCCTGATGACCCTCTTCTGACCTATGTTG
GCACCACGTATACATATAATGCAGATACGTACATGTACACAAAACATCAT
ACACATAAAAATAAATTCTAATGACCTTTTCTGTAGATTACTTCGATTCC
TATCAGTTACTGTTATACAGTTAGCATACTATGGTATATTGCATAAAAAC
TCACAGTCATAGTTCCTTCTTTTTTTTGTTTTTTGCTCTTAGAGTGAGTA
CAACAGGTAAATAATATTGAATGGTAGTATGAAAAAAGACATGCTGGACT
TGCCCTTGATTATACAAGAAATGCATTTAATTTTTCACTATTATTATAAT
GTTACTGCTAAATTTTTAAAGATGATCTTTTCCAATTTCTTTTTATTCTC
ATTATGACAAAAGCCTTTTATCCTGACTATGTGTTGCATTAAAAATGTTC
ACTCTTTCACCTAGTGTGTCATCATTGCCTCTACTGGCTGAGTCATGTAG
ACTAACACAAACTAATCAATACTGTTAGTCACAGAAAAGATGCTACTGGG
GTATTCTTATTTTTATTGTAGTAGTTGATATTTGATACTTCTCTTTATTT
ACTTATGCATTTTTCATTTAAACTAACAT

NTTTGTTTCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGACCTGATAAGCA
GCTTCAATGCAGTTGCTGAATATAAAATTAACTCAAACAAATCAGTGGCA
TTTCTCTACACAAAGGACAAACAGGCTGAGAAAGAAATTAGGGAAACAAC
ACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGTGTGACTCTAA
CTAAGGAAGTCAAAGTGCAGTATGATAAGAACTTCAAGTCTTTGAAGAAA
GAAATCAAATTAGTTCACAGAAGATGGAAAGATCTCCCATGCTAATGGAT
TGGCAGGATTAATATAGTAAACATGACTATCTTGCTGAAAGAAATCTACA
GAGTCATCAAAATTCCACTCAATACTTAGAGTAAAAAGGGTAATTTGCAT
AGGCAGCTGGCGCCTAAAAGATGGCGCCAGTCTCTGGTACACCATCTCCA
TAAACAACATCACTGAGCAGGTGCTAGCCCGTATCTGGCGCCAACCCCTC
CTGAGCAGGTGCTTGCTAATTAAAGTACCAGCAGACTGACCAATCCCAGG
AGGACACATAGCCCTCCCCAGTACTGGGGTGTATATAAGTAGTCCTCCCT
GGGTTCCCGGGGTTCCCGTAGCATCGAGGAGTTCCTGGAGTAAAGCTGTT
GAGAAGAATCTGACCGTGTTGCATTTTTCCTTACCGG

Query= MSMg01no532_i17.b1 MSMg01no532_i17.b1 CHROMAT_FILE:
MSMg01no532_i17.b1 PHD_FILE: MSMg01no532_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:29 2005
         (659 letters)



>mm_chr4_17731320_17732378
          Length = 1059

 Score = 1112 bits (575), Expect = 0.0
 Identities = 605/621 (97%), Gaps = 12/621 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagggttggttcccagaatgtacatggtggcttataaccacatatagttaaattc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattcagggttggttcccagaatgtacatggtggcttataaccacatatagttaaattc 561

                                                                       
Query: 66  agttcctgatgaccctcttctgacctatgttggcaccacgtatacatataatgcagatac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agttcctgatgaccctcttctgacctatgttggcaccacgtatacatataatgcagatac 501

                                                                       
Query: 126 gtacatgtacacaaaacatcatacacataaaaataaattctaatgaccttttctgtagat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtacatgtacacaaaacatcatacacataaaaataaattctaatgaccttttctgtagat 441

                                                                       
Query: 186 tacttcgattcctatcagttactgttatacagttagcatactatggtatattgcataaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacttcgattcctatcagttactgttatacagttagcatactatggtatattgcataaaa 381

                                                                       
Query: 246 actcacagtcatagttccttcttttttttgttttttgctcttagagtgagtacaacaggt 305
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actcacagtcatatttccttcttttttttgttttttgctcttagagtgagtacaacaggt 321

                                                                       
Query: 306 aaataatattgaatggtagtatgaaaaaagacatgctggacttgcccttgattatacaag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaataatattgaatggtagtatgaaaaaagacatgctggacttgcccttgattatacaag 261

                                                                       
Query: 366 aaatgcatttaatttttcactattattataatgttactgctaaatttttaaagatgatct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaatgcatttaatttttcactattattataatgttactgctaaatttttaaagatgatct 201

                                                                       
Query: 426 tttccaatttctttttattctcattatgacaaaagccttttatcctgactatgtgttgca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tttccaatttctttttattctcattatgacaaaagccttttatcctgactatgtgttgca 141

                                                                       
Query: 486 ttaaaaatgttcactctttcacctagtgtgtcatcattgcctctactggctgag---t-- 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||   |  
Sbjct: 140 ttaaaaatgttcactctttcacctagtgtgtcatcattgcctgtactggctgaggcatgt 81

                                                                       
Query: 541 ------catgtagactaacacaaactaatcaatactgttagtcacagaaaagatgctact 594
                 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 80  agacagcatgtagactaacacaaacta-tcaatactgttagtcacagaaaggatgctact 22

                                
Query: 595 ggggtattcttatttttattg 615
           |||| ||||||||||||||||
Sbjct: 21  ggggcattcttatttttattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)