NNAAAGACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGG
ATCCGCGGAATTCATATAATAAATTACATCTACAAGATTTGCCATGAAAC
AATGGATCAGCCCATACAATACAACAGATAACATAGAGAAATAAAATTGG
GATAGGTTACTTCATGAAAATTACAAAACATAAAGATATTTTTGAAAAAA
AAATGGTTCATTAAAATTTACCCTGCAGTACTTATTTAACATTATCCCTC
ATATTAAGTCCTTGTACAAATGTAAGGCACATATGGGGTCTACTAAAATG
ATTTTGCTATGTAGCTACAGCCTGACAATAGCTCATTAAGGGCCAATATA
TCTAGCTTAATTGTGACAAATAAAACACATCCTGCAAATAAAAGAGTCAT
TTAAATTGTCAGCCAATGGTTTATTCGTTTGAAAAAGTTTACTGAAACAA
ACAACACTAGCATTGGTGTGGACACTTATTGGGCTAAAATAAAACCTTGC
TAAATTAACACATTGGGGAATTCAGATGTAGTACAACAATCACAAGATGT
CATAGAGTTGGCAGAAGAATGACTATAGGTTACAATAATCACATGGGTTA
TTCAATAACTCAGCCCACTTTAGCCATTAGCAATAAACTAATTGGAAGGA
AGTTGTAAAGAATTGCAAGATTGAAAGTTCCCCAAGGATAAAAACTGATA
GGCTAAGACACTAGCCCAAAGCCATCTCTAAAGTCCAAAATAN

NTTTTTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGTCCCTTGTTGT
CATCTAAATTAATGACCTATTTTTATTTCAGTGAATGTATAAGAATGTGC
ATAATATAATTGACTGTATATTTTCTAATAATAAACATACATCCTTTTCA
TTCTGTAAAATGTTACTTGTATGTTTTCAGACTGAGCATTTGTTTTTGGA
TAAACAATTGGTGTGCCCTTCTCTGGGGAAGGCTGTTTCTCCCAGTCTCA
GTATTCCTTATTGTTTTTTATCTTTGGTGAACTCTCATGAAATCACTTCG
CTCCATGTTAACATGTCTATTGGTCTCATCCTTGTTCATCTCATGTTTCA
ATAGCTATGTTGCTAAGACTCCATGGATGTAGTGCCTGAAATTATAAGAC
ACAACATAATAGCAAATACCTAGATCCTCTGGCTCTTAAAATCTTTCCCT
CCTTTTGCAATATTCCTTGAGCTGGGAACACAGAAGTTGTGTTGTAGATG
TATCCTTTGGGATTAGGCTCTATGACTCTACAGATGATTGATAGTAGTTT
TCTGTAATGGTCTTCACTCATTTCAAAGAGAAGTTTCCTTGCTGAGGAGT
GAAGACTACATTTATTTATGGTTATAAGGATAAATATTTAGAAATAGTTA
GGAATTATGTGGCTTTAGTGAGGTGATAGTTGCAGCATCTCCTTTGAGAC
CC

Query= MSMg01no532_i23.b1 MSMg01no532_i23.b1 CHROMAT_FILE:
MSMg01no532_i23.b1 PHD_FILE: MSMg01no532_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:30 2005
         (686 letters)



>mm_chr4_16415958_16417041
          Length = 1084

 Score = 1249 bits (646), Expect = 0.0
 Identities = 671/680 (98%), Gaps = 2/680 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatataataaattacatctacaagatttgccatgaaacaatggatcagcccatac 66
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattcatataataaaatagatctacaagatttgccatgaaacaatggatcagcccatac 825

                                                                       
Query: 67  aatacaacagataacatagagaaataaaattgggataggttacttcatgaaaattacaaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aatacaacagataacatagagaaataaaattgggataggttacttcatgaaaattacaaa 765

                                                                       
Query: 127 acataaagatatttttgaaaaaaaaatggttcattaaaatttaccctgcagtacttattt 186
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 acataaagatatttttg--aaaaaaatggttcattaaaatttaccctgcagtacttattt 707

                                                                       
Query: 187 aacattatccctcatattaagtccttgtacaaatgtaaggcacatatggggtctactaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 706 aacattatccctcatattaagtccttgtacaaatgtaaggcacatgtggggtctactaaa 647

                                                                       
Query: 247 atgattttgctatgtagctacagcctgacaatagctcattaagggccaatatatctagct 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgattttgctatgtagctacagcctgacaatagctcattaagggccaatatatctagct 587

                                                                       
Query: 307 taattgtgacaaataaaacacatcctgcaaataaaagagtcatttaaattgtcagccaat 366
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 586 taattgtgacaaataaaacacatcctgcaaataaaagactcatttaaattgtcggccaat 527

                                                                       
Query: 367 ggtttattcgtttgaaaaagtttactgaaacaaacaacactagcattggtgtggacactt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggtttattcgtttgaaaaagtttactgaaacaaacaacactagcattggtgtggacactt 467

                                                                       
Query: 427 attgggctaaaataaaaccttgctaaattaacacattggggaattcagatgtagtacaac 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attgggctaaaataaaaccttgctaaattaacacattggggaattcagatgtagtacaac 407

                                                                       
Query: 487 aatcacaagatgtcatagagttggcagaagaatgactataggttacaataatcacatggg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 406 aatcacaagatgtcatagagttggcagaagaatgactataggttacaatcatcacatggg 347

                                                                       
Query: 547 ttattcaataactcagcccactttagccattagcaataaactaattggaaggaagttgta 606
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttagtcaataactcagcccactttagccattagcaataaactaattggaaggaagttgta 287

                                                                       
Query: 607 aagaattgcaagattgaaagttccccaaggataaaaactgataggctaagacactagccc 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aagaattgcaagattgaaagttccccaaggataaaaactgataggctaagacactagccc 227

                               
Query: 667 aaagccatctctaaagtcca 686
           ||||||||||||||||||||
Sbjct: 226 aaagccatctctaaagtcca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1084
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1074
Effective search space:   726024
Effective search space used:   726024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)