Query= MSMg01no532_l12.b1 MSMg01no532_l12.b1 CHROMAT_FILE:
MSMg01no532_l12.b1 PHD_FILE: MSMg01no532_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:43 2005
(653 letters)
>mm_chr4_68094986_68096039
Length = 1054
Score = 1147 bits (593), Expect = 0.0
Identities = 636/651 (97%), Gaps = 3/651 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttatactctatcctcaaaatgtctggcatgctcaatctggcatgttcaatcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcttttatactatatcctcaaaatgtctggcatgctcaatctggcattttcaatcc 264
Query: 65 cagcagtttgtatttcatcaatctcatatgttttatcttattataaatcttatatgattt 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 cagcagtttgtatttcatcaatctcatatgttttatcttattataagtcttatatgattt 324
Query: 125 atcttcctgctttactgtctttttgttgtctccctccc--tgtctccgaaaaacctcttc 182
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 325 atcttcctgctttaatgtctttttgttgtctccctccctgtgtctccgaaaaaccttttc 384
Query: 183 catactaaaatactgtttgcaagtgtctcttctaccatgatgttttctttcattttccac 242
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 385 catactaaaatactgtttgcaagtgtctcttctaccatgatgctttctctcattttccac 444
Query: 243 ttaacatctattccgttaagaagattttctttacagtagtcagacaatatttattttatt 302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaacatctattccattaagaagattttctttacagtagtcagacaatatttattttatt 504
Query: 303 attacaagacaggcactaattagaatttatggaagactaatctccttagatatagaattt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attacaagacaggcactaattagaatttatggaagactaatctccttagatatagaattt 564
Query: 363 tagattaggttactttgtatagagtgaataatgtaatcaagaggggaagatggctctatg 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 tagattaggttactttgtatagagtgaataatgtaatcaagagggaaagatggctctatg 624
Query: 423 tttgaatcctcatgttatatattactaaagatatttgtttgaatagtaacactaccattc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgaatcctcatgttatatattactaaagatatttgtttgaatagtaacactaccattc 684
Query: 483 taaagcagttttgtttttgcttgaaaattgggatattaaaaatccctttggaaatgagta 542
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 taaagcagttttgtttttacttgaaaattgggatattaaagatccctttggaaatgagta 744
Query: 543 tgaaaaattttcaaatataagatacagatagactttatcaaaatctttcttctataatgg 602
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 tgaaaa-ttttcaaatataagatacagatagactttatcaaaatctttcttctatgatgg 803
Query: 603 aagtcattcaccactgtttactattaccactgcttgcattgtttttgctta 653
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagtcattcaccactgtttactattaccactgcttgcattgtttttgctta 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_l12.g1 MSMg01no532_l12.g1 CHROMAT_FILE:
MSMg01no532_l12.g1 PHD_FILE: MSMg01no532_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:43 2005
(571 letters)
>mm_chr4_68156950_68157920
Length = 971
Score = 907 bits (469), Expect = 0.0
Identities = 469/469 (100%)
Strand = Plus / Minus
Query: 1 ttttgaacataaaaaacacaatgcctcaaaagctccaacagattagtaaacttggtaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttttgaacataaaaaacacaatgcctcaaaagctccaacagattagtaaacttggtaact 410
Query: 61 acttttaactggctgttgcttacataacatatatatgagtctgcatatcttcaatatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acttttaactggctgttgcttacataacatatatatgagtctgcatatcttcaatatgtg 350
Query: 121 ttatactgtgaattatctagaattgagaaaaattgtgttttgtacagtcctgaaaaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttatactgtgaattatctagaattgagaaaaattgtgttttgtacagtcctgaaaaataa 290
Query: 181 aatgattcatgataaccacattgttggttttgaatgggcttattaaggacaaagcaggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aatgattcatgataaccacattgttggttttgaatgggcttattaaggacaaagcaggtc 230
Query: 241 actgtaaaacaatgtataacaaattacatataaatatatagattgataaacatagatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 actgtaaaacaatgtataacaaattacatataaatatatagattgataaacatagatgaa 170
Query: 301 tgatagatagatggcaggtagatagatgatagatagattggttgatagatagaaagatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgatagatagatggcaggtagatagatgatagatagattggttgatagatagaaagatag 110
Query: 361 atagatgttagatgataataactagagagatgatagaaaaacatcatagatccaagtgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atagatgttagatgataataactagagagatgatagaaaaacatcatagatccaagtgtg 50
Query: 421 caaaacatccaagaaaaagacaactaggaaagccctgcggaggcagcca 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 caaaacatccaagaaaaagacaactaggaaagccctgcggaggcagcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
