BAC Information

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BAC

Clone NameMSMg01-532M14
Chromosome4 (Build37)
Map Location 118,925,360 - 119,059,365
singlet/doubletdoublet
Overlap geneCldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2
Upstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1
Downstream geneLOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532M14.T7 (MSMg01no532_m14.b1)MSMg01-532M14.TJ (MSMg01no532_m14.g1)
ACCAG600862AG600863
length741743
length of high quality
(start - end)		585 (76 - 660)572 (83 - 654)
definitionCHROMAT_FILE: MSMg01no532_m14.b1 PHD_FILE: MSMg01no532_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:48 2005CHROMAT_FILE: MSMg01no532_m14.g1 PHD_FILE: MSMg01no532_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,058,784 - 119,059,365)(118,925,360 - 118,925,931)
sequence
CCCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGATTTTTGCGAAGAGCCTTGGTGATACCTGCCTAATCTG
CCTAATCTCCAGTGTCATGTGACCAGTGTCATGTGACCTTCTCTCCCAGT
ATTTGTCTTCCTGTAAAAGATGCTCAAGCGCCATCACAGTCTCCCTAGTA
CTCAGCATTGAGTACTAGTTTGAGTACTCACAAGTTTGGTTTGAGTAGCT
ATGGGTCAATCATCCTTTAGACCATGGTGTAAACCAGGCTTCCTTTCCTC
ATCATCAGGACTTGGAACAAATATGTACTGATACAGTTACAAAATACACT
TCACCCACATGCTGGGACCTACTTATAAAGATCGTTGCAAGTAATTATTC
TCCCTAGAGCAAAGAACAGATATAGCCTATAATTTCACAAATATTACTGA
CTATATAAAGAATCGTATATGCTGTGTAGAGAGGAGGGAGGCAGGGTCTC
TCTAGCCCAGACTGACTTGAAGCTTACTAGGTAGACCAGGTTAGCCTCGA
GTTAACCTCCTGTCTCTGTTTCCTGGGTGCTAGGATTATATGCGTTCAAT
ACATAGACCTATTAAAACTAGGAAACGTTATCAGTGAATGATGGCTAATG
TGAGTTACAAACTTTTAAGGTAATTCCTGAAGAAGGTTGATAACTGAACA
TGGATATTTTTTCCCCCTTCAAAGTTCTTTCACAAAGAAAN

GGGGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGGCTTTGGAACAC
TGGTACAGGAAGGCTGTTGGTGAAGCAGAGAATATTCAGGTAGAACAGAC
CCAAATCTCAAATGACAAAGGAAAAAAAAAAAACTGCAGGAGTTTCAGGG
GACGATATAAGAATCGTGGAACCTTACGCTGGCTGGTGGTGAATTAACCT
AACCCGGCACTCTGGAGGCAGAGGCAGGTGTATCTTTCTGAGTTCCAGGC
CAGCCTGGTCTATAGAGCTAGTGCCAGGATAGCCAGGGCTACACACATGA
GAAGAAAAAGTAATTATGGAGGCTCTGGGTTTTTAGTCTGGGGATGACCT
GAAGGAAGGAAGGTGTAGACAGACAGGCTTCCTGCTGCCCCTCAGGCTTC
AAATCTGGGACACATTAGCTCTGGGGACAATGAGCACCATCCCCTCCACC
TCAGCTCTCACATGTCTGGAGACAGGGGTCACAGCTAGTGTTCAGTGTGG
CCCTGATGCTCCAGAACTCAGGGATCTGACCAGTGTGTCCAAGGTCAGAA
CGAGGCTTGGTTCTTCCTCACAGAGAACTCTTTGCCAGAGGCCAAGGCTC
AGCTTGGGGAGAGAGGAACTTGTCTGGCCTTTCCAATAGCCTCTGTAGAG
TTGCTACCAGTGCAGACCCTCTGACTCCCCTAAGCTTCATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_m14.b1 MSMg01no532_m14.b1 CHROMAT_FILE:
MSMg01no532_m14.b1 PHD_FILE: MSMg01no532_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:48 2005
         (585 letters)



>mm_chr4_119058754_119059738
          Length = 985

 Score = 1040 bits (538), Expect = 0.0
 Identities = 571/582 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccttggtgatacctgcctaatctgcctaatctccagtgtcatgtgaccagtgtcatgtg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gccttggtgatatctgcctaatctgcctaatctccagtgtcatgtgaccagtgtcatgtg 553

                                                                       
Query: 61  accttctctcccagtatttgtcttcctgtaaaagatgctcaagcgccatcacagtctccc 120
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 552 accttctctcccagtatttgccttcctgtaaaagatgctcaagcgtcatcacagtctccc 493

                                                                       
Query: 121 tagtactcagcattgagtactagtttgagtactcacaagtttggtttgagtagctatggg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||
Sbjct: 492 tagtactcagcattgagtacttgtttgagtactcacaagtttggtttgaatagctacggg 433

                                                                       
Query: 181 tcaatcatcctttagaccatggtgtaaaccaggcttcctttcctcatcatcaggacttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcaatcatcctttagaccatggtgtaaaccaggcttcctttcctcatcatcaggacttgg 373

                                                                       
Query: 241 aacaaatatgtactgatacagttacaaaatacacttcacccacatgctgggacctactta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 372 aacaaatatgtactgatacagttacaaaatacacttcacccacatgctgggacctgctta 313

                                                                       
Query: 301 taaagatcgttgcaagtaattattctccctagagcaaagaacagatatagcctataattt 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 taaagattgttgcaagtaattattctccctagagcaaagaacagatatagcctataattt 253

                                                                       
Query: 361 cacaaatattactgactatataaagaatcgtatatgctgtgtagagaggagggaggcagg 420
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 cacaaatattactaactatataaagaatagtatatgctgtgtagagaggagggaggcagg 193

                                                                       
Query: 421 gtctctctagcccagactgacttgaagcttactaggtagaccaggttagcctcgagttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtctctctagcccagactgacttgaagcttactaggtagaccaggttagcctcgagttaa 133

                                                                       
Query: 481 cctcctgtctctgtttcctgggtgctaggattatatgcgttcaatacatagacctattaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cctcctgtctctgtttcctgggtgctaggattatatgcgttcaatacatagacctattaa 73

                                                     
Query: 541 aactaggaaacgttatcagtgaatgatggctaatgtgagtta 582
           ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 72  aactaggaaacgttatcggtgaatgatggctaatgtgagtta 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_m14.g1 MSMg01no532_m14.g1 CHROMAT_FILE:
MSMg01no532_m14.g1 PHD_FILE: MSMg01no532_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:48 2005
         (572 letters)



>mm_chr4_118925160_118926131
          Length = 972

 Score = 1098 bits (568), Expect = 0.0
 Identities = 571/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatggctttggaacactggtacaggaaggctgttggtgaagcagagaatattcaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatggctttggaacactggtacaggaaggctgttggtgaagcagagaatattcaggta 260

                                                                       
Query: 61  gaacagacccaaatctcaaatgacaaaggaaaaaaaaaaaactgcaggagtttcagggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacagacccaaatctcaaatgacaaaggaaaaaaaaaaaactgcaggagtttcagggga 320

                                                                       
Query: 121 cgatataagaatcgtggaaccttacgctggctggtggtgaattaacctaacccggcactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgatataagaatcgtggaaccttacgctggctggtggtgaattaacctaacccggcactc 380

                                                                       
Query: 181 tggaggcagaggcaggtgtatctttctgagttccaggccagcctggtctatagagctagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggcagaggcaggtgtatctttctgagttccaggccagcctggtctatagagctagt 440

                                                                       
Query: 241 gccaggatagccagggctacacacatgagaagaaaaagtaattatggaggctctgggttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaggatagccagggctacacacatgagaagaaaaagtaattatggaggctctgggttt 500

                                                                       
Query: 301 ttagtctggggatgacctgaaggaaggaaggtgtagacagacaggcttcctgctgcccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagtctggggatgacctgaaggaaggaaggtgtagacagacaggcttcctgctgcccct 560

                                                                       
Query: 361 caggcttcaaatctgggacacattagctctggggacaatgagcaccatcccctccacctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggcttcaaatctgggacacattagctctggggacaatgagcaccatcccctccacctc 620

                                                                       
Query: 421 agctctcacatgtctggagacaggggtcacagctagtgttcagtgtggccctgatgctcc 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 agctctcacatgtctggagacaggggtcacagctagtgttcagtgtggtcctgatgctcc 680

                                                                       
Query: 481 agaactcagggatctgaccagtgtgtccaaggtcagaacgaggcttggttcttcctcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaactcagggatctgaccagtgtgtccaaggtcagaacgaggcttggttcttcctcaca 740

                                           
Query: 541 gagaactctttgccagaggccaaggctcagct 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 gagaactctttgccagaggccaaggctcagct 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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