BAC Information

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BAC

Clone NameMSMg01-532O21
Chromosome4 (Build37)
Map Location 100,510,989 - 100,511,315
singlet/doubletsinglet
Overlap geneCachd1
Upstream geneBC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573
Downstream geneLOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532O21.T7 (MSMg01no532_o21.b1)MSMg01-532O21.TJ (MSMg01no532_o21.g1)
ACCAG600972AG600973
length757776
length of high quality
(start - end)		679 (49 - 727)559 (82 - 640)
definitionCHROMAT_FILE: MSMg01no532_o21.b1 PHD_FILE: MSMg01no532_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:00 2005CHROMAT_FILE: MSMg01no532_o21.g1 PHD_FILE: MSMg01no532_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCC
GCGGAATTCTTAATTAATCTCACCATTTTTTCAACTCCCAGGTGGGTGAA
TTGGTGTAGTCCTTTCACAAATTTTATTCCTTCTTCGGGAGTCAATTCTA
TTTTCCCTTCAAAAAAGTATGGGAGGGGATCACTGGTCCACAATAGCTCT
TTTATGTTATATCTCTCATCCTCAGGGCTTTTGGGCGGATCACCTTTTTC
AGTTAAGATCATGGCCCCTTGAGCAACTTGTTTTGCCACTGAGTCTGCCA
TTCGGTTGCCCTTGGCCACCAAGTCTTCTCCTCTTTGGTGGCCGGGGCAG
TGGATGATGGCTACCTTCTTAGGTGCATGTATGGCTTCCAACAGGGCCAG
AATTTCTTCTTTGTTTTTAATGTCTTTACCGGCCGAAGTCAATAGCCCTC
GCTGCCTGTAGATGGCCCCATGGATGTGTGCGGTAGCAAAAGCATAGCGG
CTGTCAGTGTAGATGTTAACGATCTTACCTTTAGCCTCTCGGAGGGCTTG
TATAAGTGCTATAAGTTCAGCCTTTTGTGCCGACGTTCCTTCAGGCAAGG
CGCTTGCCCAAATTACCTTTTTCCCGTCCACCACCGCAGCTCCAGCCTTT
CGCTTCCCCTCTATCAGGAAACTGCTGCCGTCCGTATACCAACTGGGAGC
TCCAGGCCAGGGTTGGTCAGTCAGGTCTCTTCTGGTCCAGTTTCTTCAGC
GAGGATG

NAAAGACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATCAGGTGTGGGGAAG
GACAGGAGGGATGGCTAGACTTCCAGAAGCATGAATGGGAATTTGCAACT
GACAGGGGTGGGGAGGTAAGGGGCATCTCCAGAACAAGACAGAGACCTGG
GATAAGGGAGGTGCCTGAGTATCAAAGGGGGTGACCTTAGCTGTAAATCT
CTACATTGGGCATATGGAACCTAAAGAGGCTACATCTTGTAGCCAGGCAG
GAACCCCAGGAAAGCAATAGAGACAGAAACCCACTTTCAAATTTTTCAAC
CCAAAATTTGTGCACAAGAAATACAGGGGATGGAACAGAGACTGAGGGAA
TGGCCAACCAATAACCAGCCCAACTTGAGACCCATGTGATGGTCAAGCAC
CAATCCCTGACACTATTGATGATACTTGATTATGCTTGCAGACAGGAGCA
TGTTGTCCTCTGAACCATCTCTTTAACCCTGTCAAGTCTGGATTTTTCCT
TTCACTTTCTAGCACCGTCAACCCAGCATGGGTACTCGGTGACCTCCCTG
AGTTTGTTTTCTATAAGAAAAAGGACTAGATGTCTGCTGCCTAAGGGAAT
GCAATGTTAAGAAAATACACAAAGCAAAAGGAAGAGCCAGGATCACGGCA
GGCACGAGAAACAAAGCTAGCATCCCCTGATCATCACCAGCTCCATTTTT
ACTTTCGAGTGACATTAGAGTTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_o21.g1 MSMg01no532_o21.g1 CHROMAT_FILE:
MSMg01no532_o21.g1 PHD_FILE: MSMg01no532_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:00 2005
         (559 letters)



>mm_chr4_100510357_100511315
          Length = 959

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 233 gcaatagagacagaaacccactttcaaatttttcaacccaaaatttgtgcacaagaaata 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 gcaatagagacagaaacccactttcaaatttttcaacccaaaatttgtgcacaagaaata 900

                                                                       
Query: 293 caggggatggaacagagactgagggaatggccaaccaataaccagcccaacttgagaccc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 caggggatggaacagagactgagggaatggccaaccaataaccagcccaacttgagaccc 840

                                                                       
Query: 353 atgtgatggtcaagcaccaatccctgacactattgatgatacttgattatgcttgcagac 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 839 atgtgatggtcaagcaccaatccctgacactattgatgatacttgattatggttgcagac 780

                                                                       
Query: 413 aggagcatgttgtcctctgaaccatctctttaaccctgtcaagtctggatttttcctttc 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aggagcatgttgtcctctgaaccatctctttaaccctgtcaagtctggatttttcctttc 720

                                                                       
Query: 473 actttctagcaccgtcaacccagcatgggtactcggtgacctccctgagtttgttttcta 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 actttctagcaccgtcaacccagcatgggtactcggtgacctccctgagtttgttttcta 660

                                      
Query: 533 taagaaaaaggactagatgtctgctgc 559
           |||||||||||||||||||||||||||
Sbjct: 659 taagaaaaaggactagatgtctgctgc 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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