BAC Information

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BAC

Clone NameMSMg01-532P07
Chromosome4 (Build37)
Map Location 40,736,182 - 40,736,800
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305
Downstream geneB4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532P07.T7 (MSMg01no532_p07.b1)MSMg01-532P07.TJ (MSMg01no532_p07.g1)
ACCAG600992AG600993
length747749
length of high quality
(start - end)		622 (49 - 670)543 (89 - 631)
definitionCHROMAT_FILE: MSMg01no532_p07.b1 PHD_FILE: MSMg01no532_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:02 2005CHROMAT_FILE: MSMg01no532_p07.g1 PHD_FILE: MSMg01no532_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTTGTATACCAGGCTGGCCTCAAACTCAGAAATCCACCTG
CCTCTGTCTCCCAAGTGCTGGGATCAAAGGCATGTGCCACCATGCCCAGC
TGTTTTCTGTCTTAAGTGAACTTTTATACCAATATTAATTAATCTGAGAT
ATGATTTTTTTTTGGACACAATCAACCCTTTGACTGATTCAGTGAAACTT
TTTCATTAATGACTAAACCCTGTTCCTAATGGTTTGGGGTTTCAAAATTC
ATAAAATAGAGGCTCCAAGAGTTCCCTGGGAGGACCGATGCCTGTCTAGC
CAGCCATTTTGAACTGCTACTAATGTTGCAAGGAAACTTTCTACTATGCT
GTAACTACTGTTACTAGGAAACTTTCTCATGCCCCACTTGATTGGACATT
CTCTTAAGCTGCCCCTGGAATGGACCACAACATAAGAGAAACACCTGCCC
CAATATAAAAAACCATCTGGAATGATACTTCTATTTTGAGTAGGGATCGA
GTAAAGTTTTAAGTTCCCAAGACCTCCCTGGGAACTCACATCCTACTTGG
CAGAAAGAGACATGTATGTGGGTAACTGATATCCTGGTTCTCAAGACATG
AATGTTAAGACATGGGAAGTCCCCTGCCACAGTTGAATACCCCAACCAAT
GGGGACAGGATAAGTGTACAACAAAGACTTGTCCTAAGGAAACCCCT

TTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAGACACCCT
GTCTCAAAAAATAGAGTGAGTCACAGTTGAGGAAGACAGTCAACATCAAC
CCCCAGCCTCCACACACACCTGTGTACATGTGCACGTGCAAAAATAGACA
TACATACACCACAGAGAGGCAGACGGACAGACAGTGCATACAGATGCACA
GTAGGATATTATACAACATAAGAAGGAAATCCTGCTGTTTGTGACATCAT
GGACAGAACTAGCACTCGTTACAAAAAAATAAAACCAACACAAAAAGACA
AGTGTATATGGCCTCACTCATGTTGCATCTGAACAAACTGACCTCATGGA
AGGTGAGAATTATAGGGGAATTTTAGTCAGTAACATGGCTGCTCTGGCAA
GGGATCACATCCAAAGACCTTCTAGATCTATGTGACCTGGCTGGGATACA
GACATGCCCTTAATCCAAAACACGGAAGACAAAGTTAGTTTGGAGAAGGA
AGCACCCATGTATGAAAGTGATGTCTAATTGAGTGACAAAGTGACAAATC
AGAGAAAGACTTGACAGAATGAGTCAGAGATAGGACACACCCAACTCACA
GGAGAACAGACAGGAAGGAGAGGCTACTTAAGAGCAGCACACACAGAGAA
GGGTGGTGACATGCTATATATATAGTATGTGTGGACAGTTTCACAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_p07.b1 MSMg01no532_p07.b1 CHROMAT_FILE:
MSMg01no532_p07.b1 PHD_FILE: MSMg01no532_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:02 2005
         (622 letters)



>mm_chr4_40736095_40737116
          Length = 1022

 Score = 1174 bits (607), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtataccaggctggcctcaaactcagaaatccacctgcctctgtctcc 63
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggaactcactttgtagaccaggctggcctcaaactcagaaatccacctgcctctgtctcc 647

                                                                       
Query: 64  caagtgctgggatcaaaggcatgtgccaccatgcccagctgttttctgtcttaagtgaac 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caagtgctgggatcaaaggcgtgtgccaccatgcccagctgttttctgtcttaagtgaac 587

                                                                       
Query: 124 ttttataccaatattaattaatctgagatatgatttttttttggacacaatcaacccttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttttataccaatattaattaatctgagatatgatttttttttggacacaatcaacccttt 527

                                                                       
Query: 184 gactgattcagtgaaactttttcattaatgactaaaccctgttcctaatggtttggggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gactgattcagtgaaactttttcattaatgactaaaccctgttcctaatggtttggggtt 467

                                                                       
Query: 244 tcaaaattcataaaatagaggctccaagagttccctgggaggaccgatgcctgtctagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcaaaattcataaaatagaggctccaagagttccctgggaggaccgatgcctgtctagcc 407

                                                                       
Query: 304 agccattttgaactgctactaatgttgcaaggaaactttctactatgctgtaactactgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agccattttgaactgctactaatgttgcaaggaaactttctactatgctgtaactactgt 347

                                                                       
Query: 364 tactaggaaactttctcatgccccacttgattggacattctcttaagctgcccctggaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tactaggaaactttctcatgccccacttgattggacattctcttaagctgcccctggaat 287

                                                                       
Query: 424 ggaccacaacataagagaaacacctgccccaatataaaaaaccatctggaatgatacttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ggaccacaacataagagaaacacctgccccaatataaaaaaccatctggaatgatacttc 227

                                                                       
Query: 484 tattttgagtagggatcgagtaaagttttaagttcccaagacctccctgggaactcacat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tattttgagtagggatcgagtaaagttttaagttcccaagacctccctgggaactcacat 167

                                                                       
Query: 544 cctacttggcagaaagagacatgtatgtgggtaactgatatcctggttctcaagacatga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cctacttggcagaaagagacatgtatgtgggtaactgatatcctggttctcaagacatga 107

                              
Query: 604 atgttaagacatgggaagt 622
           |||||||||||||||||||
Sbjct: 106 atgttaagacatgggaagt 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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