BAC Information

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BAC

Clone NameMSMg01-533C17
Chromosome4 (Build37)
Map Location 14,292,419 - 14,292,809
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533C17.T7 (MSMg01no533_c17.b1)MSMg01-533C17.TJ (MSMg01no533_c17.g1)
ACCAG601155AG601156
length727757
length of high quality
(start - end)
394 (53 - 446)248 (325 - 572)
definitionCHROMAT_FILE: MSMg01no533_c17.b1 PHD_FILE: MSMg01no533_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:18 2005CHROMAT_FILE: MSMg01no533_c17.g1 PHD_FILE: MSMg01no533_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCGCTGAGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATAAAATTTTACCTATTTAAGAGATGTTTTCAACACA
ACGTAGCATTATCGACCTAATTTTACTATGTGTGACTTTTCTTTAAGTAA
GTCTTAGTAACTGGCAGCATTTAAGAAAAGATTAAGTGAAGTGGTCCTTC
AATCCCTATTCCTACTTTATAGGATGCCAACCCTGTTGGTTATAATGACA
ACAAATTGCAGCAGCATTGCATGCATTTCATGAAGCACAAACAATAATAA
TTCTCCCTACTGCCCATGCTCAAATACCCACCTAATCTATCATAATTATA
GTTTTGAGCATCAAAATTTTTATATAATTCTCTCTTTATGAAAGGTTTGC
TTTACCCCATTTTCACCGCAGTGTAACTGCTACATACAAAAACATAGTAG
AATCATGTAGACAGACTCTTACGCCTCTAGTCAGTCTTCATTTTAGTGTA
GCAAGTTGCTGTGTATCCTGTAAAATATAACATTAAGTTTGACATTTCTG
CAGAGTTATAAAAACTTAAAGCTCACTTATAAACAGTTATTTATGGAAAG
CAAGCGACATGCGACATTATTTGTCAGGGAGAATTAGGGGGCCCTCAAAC
CTCTCCTGTTTCTTCCTTCCACCCCAGAATATCTGTCACCACTCACCCAA
CTTTCATTTTTTTCTTCTTACTTTCTG
ATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGTTGTAGCACAGCTCCAAAGCTTCACT
TGTTCAAAACACCCTTTTCCCTAAGAACATGTGTGGGGCTGTGAGGGGCA
GCCTGTTCTGGTTGAATGAGGCTTTCTCCAGAGATCCAGTAGAAAACTCT
ACAAGGGATGGAGCAGTGAACCACGTTCCCAGAGACAGGTGCCTGACACC
ACAGAGCCCCCTACTCCATAATTCTGTGACTATCAATCATACAGACAAAA
CCCCAAACTCCTGTCATTCTTTTACTCCGCCCTCATAGTGACCTGACAAT
ATCCAGGTATGCTCCTCCCCAGAGTTACCTGGCAACCACAAGGTAGCCCA
GCTCACTATGAAAGGAGCTGCTTGGCCCCTCCTCACTCTTTTTAAGCTCT
CACCTTTTTTACTCTCATCTTTACTCTCCTTCTCTCTCTCCCTTACCCAC
TCTCCCTCTTTCTACCTTCTCTCTTTCTCCCTGCCTTTCTACAATAAAGC
TCTAAAACCATAGACTGTCTCTGCTCATCAAGGCTTGCCATGCTTGAATG
ATGGGATAGGCTTTCTTCTAAAGAGCCTTGTTTAACCTCCCGTCGGAAGG
TCTTCCTGTGCTCCCGCCACTGACTGGACCAAAGACTCTCGTCTGTTTGG
GAAGCACCTATCACCCCCTCTTTTCCTGTCCTCTCTTTCCGTTATTTCTG
GGGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_c17.b1 MSMg01no533_c17.b1 CHROMAT_FILE:
MSMg01no533_c17.b1 PHD_FILE: MSMg01no533_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:18 2005
         (394 letters)



>mm_chr4_14292215_14293009
          Length = 795

 Score =  687 bits (355), Expect = 0.0
 Identities = 382/393 (97%), Gaps = 5/393 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataaaattt---tacctatttaagagatgttttcaacacaacgtagcattatc 61
           |||||||||||||  |   ||  |||||||||||||||||||||||||| ||| ||||||
Sbjct: 595 gaattccataaaa--taaataaatatttaagagatgttttcaacacaacatagtattatc 538

                                                                       
Query: 62  gacctaattttactatgtgtgacttttctttaagtaagtcttagtaactggcagcattta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gacctaattttactatgtgtgacttttctttaagtaagtcttagtaactggcagcattta 478

                                                                       
Query: 122 agaaaagattaagtgaagtggtccttcaatccctattcctactttataggatgccaaccc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agaaaagattaagtgaagtggtccttcaatccctattcctactttataggatgccaaccc 418

                                                                       
Query: 182 tgttggttataatgacaacaaattgcagcagcattgcatgcatttcatgaagcacaaaca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgttggttataatgacaacaaattgcagcagcattgcatgcatttcatgaagcacaaaca 358

                                                                       
Query: 242 ataataattctccctactgcccatgctcaaatacccacctaatctatcataattatagtt 301
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 357 ataataattctccctactgcccaagctcaaatacccacctaatctatcataattatagtt 298

                                                                       
Query: 302 ttgagcatcaaaatttttatataattctctctttatgaaaggtttgctttaccccatttt 361
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttgagtatcaaaatttttatataattctctctttatgaaaggtttgctttaccccatttt 238

                                            
Query: 362 caccgcagtgtaactgctacatacaaaaacata 394
           |||||||||||||||||||||||||||||||||
Sbjct: 237 caccgcagtgtaactgctacatacaaaaacata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)