BAC Information

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BAC

Clone NameMSMg01-533D14
Chromosome4 (Build37)4 (Build37)
Map Location 122,957,744 - 122,958,094123,001,864 - 123,002,481
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334
Downstream genePabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533D14.T7 (MSMg01no533_d14.b1)MSMg01-533D14.TJ (MSMg01no533_d14.g1)
ACCAG601197AG601198
length733734
length of high quality
(start - end)		682 (52 - 733)620 (76 - 695)
definitionCHROMAT_FILE: MSMg01no533_d14.b1 PHD_FILE: MSMg01no533_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:22 2005CHROMAT_FILE: MSMg01no533_d14.g1 PHD_FILE: MSMg01no533_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:22 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(122,957,744 - 122,958,094)(123,001,864 - 123,002,481)
sequence
TCCCATATTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAG
GATCCGCGGAATTCAAGGCATATTTCAGCAAACGCCACATGCTTTTACGC
TCATGACGGTCTAGTTCAGAATTTCCTGCCTTCACAACTGTCATCAGGCT
ATCTTCGCTGAATTTTAATCTATAAGTAGCCTAATAAAGTCTATTAACAC
AAGGGGTTGGAGAGAGAGCTCAGCGGTCAAGAACACTTGCTGCTCTTACA
GAGAGACTGGGTTTGATTCCCAGCAACCATGTGGCAGATTATAATCCCTT
ATAACTCCAGGTCCAGGGAATCTGAATGCAGTACATGTACATACAGGCAG
GCACTCACATAAATACAAGTAAAAGAATAAATCTAAAAAATTCCTTTAGA
GCCTATTAATGCTTAGCATATAAGTACATGTAAAGTTTTTGCACAGGTAT
GTAGAAGCTGTGTGTGGTGGTACACACCTATACTCCCAGAGTTTGAGAAC
CACAAGCAGGATTACTATAAATTCAAAGTCAGCCTAGCATGCTCAGAGAC
CAGCTGGGTGTGGCGGGGCACACCTTTAATCCCAGCATTCCTTCCCGTGG
CAGAGGCAGGCTTATCTCTGTGAGTTCTAGGCCAGCTTGGTCTACATAGC
AAGTGCCAAGAAAGTTAGGATTACATAGAGAGACCTCCATTGTCGGTTCA
CCCTGCAAAAAAATAAAAGTTTCAAGGCTTCCN

NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTTTGACCTAACCCAGATCCCTG
CTGGGGAGGCTGTCACAGCTGCTGAGTTCCGGATCTACAAAGAACCCAGT
ACCCACCCGCTCAACACAACCCTCCACATCAGCATGTTCGAAGTGGTCCA
AGAGCACTCCAACAGGTACCGTCCCTCTGCCCAGTGCCCACCCCACCTCA
TAGCCTCATGGTCTCTGGCAGGGGTCCTGTCCAGGGGGTGAATTTCCAAG
AAAGGAAAGGGAAGCCTCCTGGGAAAGGGGCCTCAGACATGAGAAAGCGG
TTTGGCCTGGAACTCCTGCCCTGTCACTCTGGCTGTGGGGCCCTCACTAG
GTCACAGCACTGAGCCAGTGTCCCCATCAGCACATGGACTCTAAAATGTC
AAGGGTTGATTATCAGGGAAATGTGGAACCAAAGATACCAGCCCAGAGTC
AAGCAGGGAAGAGGCTCTGAGAGTGGTCCCCAGGCAGGCACAAGATACAA
GCAGCTGTGCCAACCTCCCTTGGCCCTTGGTTAATTGTCCTTTCATGTCC
ACAGGGAGTCTGACTTGTTCTTTTTGGATCTTCAGACGCTCCGATCTGGG
GACGAGGGCTGGCTGGTGCTGGACATCACAGCAGCCAGTGACCAATGGCT
GCTGAACCATCACAAGGACCTAGGACTCCGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_d14.b1 MSMg01no533_d14.b1 CHROMAT_FILE:
MSMg01no533_d14.b1 PHD_FILE: MSMg01no533_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:22 2005
         (682 letters)



>mm_chr4_122957744_122958825
          Length = 1082

 Score =  632 bits (327), Expect = 0.0
 Identities = 345/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaaggcatatttcagcaaacgccacatgcttttacgctcatgacggtctagttca 67
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaattcaaggcatagataagcaaacgccacatgcttttacgctcatgacggtctagttca 292

                                                                       
Query: 68  gaatttcctgccttcacaactgtcatcaggctatcttcgctgaattttaatctataagta 127
           ||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 291 gaatttcctgcctccacaactgtcatcctgctatcttcgctgaattttaatctataagta 232

                                                                       
Query: 128 gcctaataaagtctattaacacaaggggttggagagagagctcagcggtcaagaacactt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gcctaataaagtctattaacacaaggggttggagagagagctcagcggtcaagaacactt 172

                                                                       
Query: 188 gctgctcttacagagagactgggtttgattcccagcaaccatgtggcagattataatccc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gctgctcttacagagagactgggtttgattcccagcaaccatgtggcagattataatccc 112

                                                                       
Query: 248 ttataactccaggtccagggaatctgaatgcagtacatgtacatacaggcaggcactcac 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ttataactccaggtccagggaatctgaatgcagtacatgtacatacaggcaggcactcac 52

                                                              
Query: 308 ataaatacaagtaaaagaataaatctaaaaaattcctttagagcctattaa 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  ataaatacaagtaaaagaataaatctaaaaaattcctttagagcctattaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_d14.g1 MSMg01no533_d14.g1 CHROMAT_FILE:
MSMg01no533_d14.g1 PHD_FILE: MSMg01no533_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:22 2005
         (620 letters)



>mm_chr4_123001664_123002683
          Length = 1020

 Score = 1133 bits (586), Expect = 0.0
 Identities = 610/618 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttgacctaacccagatccctgctggggaggctgtcacagctgctgagttccggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cactttgacctaacccagatccctgctggggaggctgtcacagctgctgagttccggatc 759

                                                                       
Query: 61  tacaaagaacccagtacccacccgctcaacacaaccctccacatcagcatgttcgaagtg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tacaaagaacccagcacccacccgctcaacacaaccctccacatcagcatgttcgaagtg 699

                                                                       
Query: 121 gtccaagagcactccaacaggtaccgtccctctgcccagtgcccaccccacctcatagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtccaagagcactccaacaggtaccgtccctctgcccagtgcccaccccacctcatagcc 639

                                                                       
Query: 181 tcatggtctctggcaggggtcctgtccagggggtgaatttccaagaaaggaaagggaagc 240
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 638 ttatggtctctggcaggggtcctgtccagggggtgcatttccaagaaaggaaagggaagt 579

                                                                       
Query: 241 ctcctgggaaaggggcctcagacatgagaaagcggtttggcctggaactcctgccctgtc 300
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 578 ctcctgggagaggggcctcagacatgagaaaggggtttggcctggaactcctgccctgtc 519

                                                                       
Query: 301 actctggctgtggggccctcactaggtcacagcactgagccagtgtccccatcagcacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 actctggctgtggggccctcactaggtcacagcactgagccagtgtccccatcagcacat 459

                                                                       
Query: 361 ggactctaaaatgtcaagggttgattatcagggaaatgtggaaccaaagataccagccca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 458 ggactctaaaatgtcaagggttgattatcagggaaatgtggaaccaaagacaccagccca 399

                                                                       
Query: 421 gagtcaagcagggaagaggctctgagagtggtccccaggcaggcacaagatacaagcagc 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gagtcaagcagggaagagactctgagagtggtccccaggcaggcacaagatacaagcagc 339

                                                                       
Query: 481 tgtgccaacctcccttggcccttggttaattgtcctttcatgtccacagggagtctgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtgccaacctcccttggcccttggttaattgtcctttcatgtccacagggagtctgact 279

                                                                       
Query: 541 tgttctttttggatcttcagacgctccgatctggggacgagggctggctggtgctggaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgttctttttggatcttcagacgctccgatctggggacgagggctggctggtgctggaca 219

                             
Query: 601 tcacagcagccagtgacc 618
           ||||||||||||||||||
Sbjct: 218 tcacagcagccagtgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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