BAC Information

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BAC

Clone NameMSMg01-533I14
Chromosome4 (Build37)
Map Location 140,872,741 - 140,873,225
singlet/doubletsinglet
Overlap geneEpha2
Upstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19
Downstream geneGm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533I14.T7 (MSMg01no533_i14.b1)MSMg01-533I14.TJ (MSMg01no533_i14.g1)
ACCAG601435AG601436
length739751
length of high quality
(start - end)
66 (54 - 119)485 (78 - 562)
definitionCHROMAT_FILE: MSMg01no533_i14.b1 PHD_FILE: MSMg01no533_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:46 2005CHROMAT_FILE: MSMg01no533_i14.g1 PHD_FILE: MSMg01no533_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCAGTTATCGTCCAATAATTGGGGCGCTAATACACTCACTATATTCCAGA
GGATCCGCGGAATCATTTTTTTTGCGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTAAGCCACAGATTGCCTGACATGTGTTC
CTTTTGATCACTCTCCATATATTGAGGCAGAGCGCCTTACTTGGACCCTG
TCCTATACTATTCACCTAATCGGTGACGCCTCTCTCCTACACTCAGGCCT
GTTCGAGGGTTCCAGACATGCCCTCTTCTGTTACCTATGTGGAGCTGGCG
ATCCGAACCCCAGTATTCATGCCTACTCTTCAAGCGCTTTACCAGGTAGC
CTATGAATACATTTTTTGAAGCAAATTCTCTTGTGCCCCGCAAACTGTGT
TGTCTATGAAACTCTCTTTATCCATCTATAATGTCCAACATTTTCTATTA
TCGCGCATGCCTCCTTCCTTGTCGCTTCTGAGTGCCGGTCATTACACGGA
TACTGTTTCCTATAATTCCTCTGTGGTAAACTCCCATAAAGGTTCGACTA
TCTTTTACCTGCGACTTTTTCCCATACACTTTTTATTTTACTTTTTTTCG
CCTTATTACCCTCTCAATGCTGTTTTATATTACAACTTCCTGATTCCACC
CACCCCGGGCCTACCCTATTTCCCCCTCTTTCTTTTTTATTACTCTGCCC
CCCCTCCTTTTTCCTCTCTTTTGCCCCTTTCTCTTTTCG
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCCACTTCCTGTTTCCTCTC
TGCACACAGCTGAGTCCTGGGTACCCGTCCTCAAGTCTCACCCAGGCAGG
TGCCCCTGGAGAGTCCTCACTACCCCTGGCTCACCTGTTTGGTTAATACT
GACGCTGGCAGTCCGGAAGCTTCGGCTAGTCACCAGGCCTGAGACACCAT
TGCGTGCTTCGACAGCGAAGGTATAGTTCATGTGGGGCTCCAGGTCACTG
ACTGTCACACTCGTGCGGGTCATGGCGTGAGGAGGTTCTGAATAGCGCAC
GCTCGCCTCACAGGGCCCACACTCGCCAGACTCTGGCCAGCACTGTTCGC
AAGTGACACTGTAGACAATGTCCTGGCGGCCACCAGTGTCCTTGGGAGCT
GTCCAACGCAGTTCTACTTTGGCACCCATGCCAATGGCCGTGAGGTAGTT
GGGGGCAGAGGGTGGACCTGTCCAGAGAGTGGAGGTCAGTGGAGCTGCCC
CTCCCTCCCTCCCTCCTCACCCACTCATTTTACTCTTTTTTTTTTTTCTT
TTCCCGCTTCACGTTTATTCTCTTTTTTTCTTCTCCTCTTTATCTTTTTC
CTTATTTTCCTTTTTCATTTACTTTTCTCTATTTCATAAATTTTCACTCT
CTTTTTTTTATTTCTTTTTTATCCCCTTTCTCTCCATATTTTCTTCCTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_i14.g1 MSMg01no533_i14.g1 CHROMAT_FILE:
MSMg01no533_i14.g1 PHD_FILE: MSMg01no533_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:46 2005
         (485 letters)



>mm_chr4_140872541_140873425
          Length = 885

 Score =  930 bits (481), Expect = 0.0
 Identities = 484/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagccacttcctgtttcctctctgcacacagctgagtcctgggtacccgtcctcaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttagccacttcctgtttcctctctgcacacagctgagtcctgggtacccgtcctcaagtc 626

                                                                       
Query: 61  tcacccaggcaggtgcccctggagagtcctcactacccctggctcacctgtttggttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcacccaggcaggtgcccctggagagtcctcactacccctggctcacctgtttggttaat 566

                                                                       
Query: 121 actgacgctggcagtccggaagcttcggctagtcaccaggcctgagacaccattgcgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actgacgctggcagtccggaagcttcggctagtcaccaggcctgagacaccattgcgtgc 506

                                                                       
Query: 181 ttcgacagcgaaggtatagttcatgtggggctccaggtcactgactgtcacactcgtgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcgacagcgaaggtatagttcatgtggggctccaggtcactgactgtcacactcgtgcg 446

                                                                       
Query: 241 ggtcatggcgtgaggaggttctgaatagcgcacgctcgcctcacagggcccacactcgcc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtcagggcgtgaggaggttctgaatagcgcacgctcgcctcacagggcccacactcgcc 386

                                                                       
Query: 301 agactctggccagcactgttcgcaagtgacactgtagacaatgtcctggcggccaccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agactctggccagcactgttcgcaagtgacactgtagacaatgtcctggcggccaccagt 326

                                                                       
Query: 361 gtccttgggagctgtccaacgcagttctactttggcacccatgccaatggccgtgaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtccttgggagctgtccaacgcagttctactttggcacccatgccaatggccgtgaggta 266

                                                                       
Query: 421 gttgggggcagagggtggacctgtccagagagtggaggtcagtggagctgcccctccctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgggggcagagggtggacctgtccagagagtggaggtcagtggagctgcccctccctc 206

                
Query: 481 cctcc 485
           |||||
Sbjct: 205 cctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)