Query= MSMg01no533_i24.b1 MSMg01no533_i24.b1 CHROMAT_FILE:
MSMg01no533_i24.b1 PHD_FILE: MSMg01no533_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:48 2005
(561 letters)
>mm_chr4_97166262_97167222
Length = 961
Score = 1035 bits (535), Expect = 0.0
Identities = 550/555 (99%), Gaps = 1/555 (0%)
Strand = Plus / Plus
Query: 8 gaattctgacagtgcttccctgagttttctaactcactcatttctaagttcttcatctgt 67
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 208 gaattctgacagtgcatccctgagttttctaactcattcatttctaagttcttcatctgt 267
Query: 68 agcaagaaaactctaagcacaagctgggtgaggtctgtcaatactaacacagttattatg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agcaagaaaactctaagcacaagctgggtgaggtctgtcaatactaacacagttattatg 327
Query: 128 atgtatcaaaacatcactcaatatggaatggaacagaatggaatggaatgaaagagagt- 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atgtatcaaaacatcactcaatatggaatggaacagaatggaatggaatgaaagagagtt 387
Query: 187 atttcccagaagctctttcacagattgaagaatctctagccaggagagatattttaatca 246
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 atttcccagaagctctttcacagattgaagaatatctagccaggagagatattttaatca 447
Query: 247 atgtctgagagggaaggacatttttatgtatatagctactaaacttttctaggaacaggt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgtctgagagggaaggacatttttatgtatatagctactaaacttttctaggaacaggt 507
Query: 307 gtgtcatattaataataggacttttgtttctaaccatgtccatgaaatattagtcttcag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtgtcatattaataataggacttttgtttctaaccatgtccatgaaatattagtcttcag 567
Query: 367 cttaaattggtttgtaaaattcctggcatggtcaacatttactccttatcctcttcctcc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttaaattggtttgtaaaattcctggcatggtcaacatttactccttatcctcttcctcc 627
Query: 427 aaacattctcaggtccactccttgagatgaaacacatactgctaagctggccaagaatct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaacattctcaggtccactccttgagatgaaacacatactgctaagctggccaagaatct 687
Query: 487 gagtctagctgagccatggacctataagaaaatctactattattctactaaaggaacata 546
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 688 gagtctagctgagccatggacctataagaaaacctactattattctactaaaggaacata 747
Query: 547 ccaatgactcctagt 561
|||||||||||||||
Sbjct: 748 ccaatgactcctagt 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_i24.g1 MSMg01no533_i24.g1 CHROMAT_FILE:
MSMg01no533_i24.g1 PHD_FILE: MSMg01no533_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:48 2005
(657 letters)
>mm_chr4_97267979_97269035
Length = 1057
Score = 1255 bits (649), Expect = 0.0
Identities = 655/657 (99%)
Strand = Plus / Minus
Query: 1 tttctgatttccataacagaaccttaatatatacagcaatcttccctgtgaaattctgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tttctgatttccataacagaaccttaatatatacagcaatcttccctgtgaaattctgtc 798
Query: 61 tggggcctatacacctgtgagattaaatacattgaagtcaacaagctcctagcttggtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tggggcctatacacctgtgagattaaatacattgaagtcaacaagctcctagcttggtgg 738
Query: 121 gctcaatgccttggggatcctaggaggggaagttgttagtcttcatcagaaaactgggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gctcaatgccttggggatcctaggaggggaagttgttagtcttcatcagaaaactgggaa 678
Query: 181 actgtcaggggaagggtgtcctaccccactctccctctctatagtctcctaactcattcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 actgtcaggggaagggtgtcctaccccactctccctctctatagtctcctaactcattcg 618
Query: 241 ccttcctatcatctttgaagccttcctgcaggagccctttgccactgcagcgtcgtccgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccttcctatcatctttgaagccttcctgcaggagccctttgccactgcagcgtcgtccgt 558
Query: 301 ccctccaccaccctttgttgcctttgtcaggtgattctctgctcctagactctgttcagg 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccctccgccaccctttgttgcctttgtcaggtgattctctgctcctagactctgttcagg 498
Query: 361 cagactttcatcacatggctttctgttactatcttatcaggcaaccccactcctgctctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cagactttcatcacatggctttctgttactatcttatcaggcaaccccactcctgctctc 438
Query: 421 tccttcccagcttgcttgagcctttagtaacagggcgctccctccaccctccctgcctcc 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tccttctcagcttgcttgagcctttagtaacagggcgctccctccaccctccctgcctcc 378
Query: 481 accctcattcaaacagcctctcattccctcctctatcacagtctgctctgtttcctatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 accctcattcaaacagcctctcattccctcctctatcacagtctgctctgtttcctatta 318
Query: 541 ggggagtgtgcattttaaatgtcttagcagcgtctgtctctgcggccaccccctccctgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggggagtgtgcattttaaatgtcttagcagcgtctgtctctgcggccaccccctccctgc 258
Query: 601 cccttcccagtgagtcagacactagagcaggagcatcaatttacagttgctggccag 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cccttcccagtgagtcagacactagagcaggagcatcaatttacagttgctggccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
