NNNNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGAA
TCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTG
TCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATT
AAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATTGATGA
TTGCTCTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGGATT
TTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGT
TGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATG
AGTTGGGTAGAGTACTTTCTACTTCTATTTTGTGGAATAGTTTGTGCAGA
ACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCT
GTCTGGTCCTGGGTTTTTTTTGGCTGGGAGAGTATTAATAACTGCTTCTA
TTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGACTC
AACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCATCCAGGTT
TTTCAGTTTTGTTGAGTATAACCTTTTGTAGAAGGATCTGATGGTGTTTT
GGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTC

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCAAAATGCATTTTTACAAACAGT
GTTATATTGGAACTAGGAGAGATGGCTCAGGTCTTAGCACCCACATGGCA
ACTCATAACAGTCTGTAATCCCAGTTCCAGAGGAACTGATGCCCTCTTTT
TACTTCTGTGGGCACCAAGCATACATGCGGTGTACAGACACTCGTACACA
TAAAAATAAAAGCAAGCAAATCTTTTTAGAAAAGAATGTCATCTAATACC
AAGAGCTCAGAGTATTTTCTGAGTCTCACTAGTCAATGTAAGTCTCCATC
AAGTCAAAGGATTTTGCAAAGAGCTTTAGGGAGTTGAAATCTATCTTGAT
CAAAGTGTAAAAATGTTCTTTAGGGTCTTCAAGGAAGACAGATTGTAGGA
AGGGAAGTTCACACTTCCACAGTTCAATGTGTCTTCATTCTGGTCCCTGA
AGACATAAACAAGTACTTCTCTCTAATCCACTGCTCCTCAATCTTCCTAA
TGCTGCAACTCTTTAACACAGCTCCTCATGTTGTGGTGATCACAACCATA
AAATTATTTCATTGTGACCTCATAATTGTAATGTTGAAACTATTATGAAT
TATAAAGTAAATATTTGATATACAGAATATCCAATATGTAACCAATATGG
GATCATGGCCCAGAGGCTGAGAACCAATAATTTAACTGGTTCTCCACTGG
ACAAAGTTCAGCA

Query= MSMg01no533_j20.g1 MSMg01no533_j20.g1 CHROMAT_FILE:
MSMg01no533_j20.g1 PHD_FILE: MSMg01no533_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:52 2005
         (638 letters)



>mm_chr4_49228412_49229449
          Length = 1038

 Score = 1141 bits (590), Expect = 0.0
 Identities = 626/638 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaaaatgcatttttacaaacagtgttatattggaactaggagagatggctcaggtct 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 845 attcaaaatgcatttttacaaacagtgttatattggaactaggaaagatggctcaggtct 786

                                                                       
Query: 61  tagcacccacatggcaactcataacagtctgtaatcccagttccagaggaactgatgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 785 tagcacccacatggcaactcataacagtctgtaatcccagttccagaggaagtgatgccc 726

                                                                       
Query: 121 tctttttacttctgtgggcaccaagcatacatgcggtgtacagacactcgtacacataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 725 tctttttacttctgtgggcaccaagcatacatgcggtgtacagacactcatacacataaa 666

                                                                       
Query: 181 aataaaagcaagcaaatctttttagaaaagaatgtcatctaataccaagagctcagagta 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 665 aataaaagcaagcaaatctttttagaaaaaaatgtcatctaataccaagagctcagagta 606

                                                                       
Query: 241 ttttctgagtctcactagtcaatgtaagtctccatcaagtcaaaggattttgcaaagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttttctgagtctcactagtcaatgtaagtctccatcaagtcaaaggattttgcaaagagc 546

                                                                       
Query: 301 tttagggagttgaaatctatcttgatcaaagtgtaaaaatgttctttagggtcttcaagg 360
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 545 tttagggagttgaaatctatcttgatcaaaatgtaaaaatgttttttagggtcttcaagg 486

                                                                       
Query: 361 aagacagattgtaggaagggaagttcacacttccacagttcaatgtgtcttcattctggt 420
           |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 485 aagacagattctaggaaaggaagttcacacttccacagttcaatgtgtcttccttctggt 426

                                                                       
Query: 421 ccctgaagacataaacaagtacttctctctaatccactgctcctcaatcttcctaatgct 480
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 425 ccctgaagacataaacaagaacttctctctaatccactgcttctcaatcttcctaatgct 366

                                                                       
Query: 481 gcaactctttaacacagctcctcatgttgtggtgatcacaaccataaaattatttcattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcaactctttaacacagctcctcatgttgtggtgatcacaaccataaaattatttcattg 306

                                                                       
Query: 541 tgacctcataattgtaatgttgaaactattatgaattataaagtaaatatttgatataca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgacctcataattgtaatgttgaaactattatgaattataaagtaaatatttgatataca 246

                                                 
Query: 601 gaatatccaatatgtaaccaatatgggatcatggccca 638
           |||||||||||||||||||||||||| |||||||||||
Sbjct: 245 gaatatccaatatgtaaccaatatggaatcatggccca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)