Query= MSMg01no534_b08.b1 MSMg01no534_b08.b1 CHROMAT_FILE:
MSMg01no534_b08.b1 PHD_FILE: MSMg01no534_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:27 2005
(659 letters)
>mm_chr4_99308245_99309303
Length = 1059
Score = 1222 bits (632), Expect = 0.0
Identities = 650/656 (99%), Gaps = 2/656 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttatacatgcttattgaaatttcctgccctgtaatattttagcaagatgctc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaaacatgcttattgaaatttcctgccctgtaatattttagcaagatgctc 264
Query: 65 taaatatatacagcttgcaaatggtaaacattgtgagacaagattgctgccgtgttttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaatatatacagcttgcaaatggtaaacattgtgagacaagattgctgccgtgttttct 324
Query: 125 tccttaggcaaacagtaccactggcaaaacgccctgtgtaaataactgcataggtatgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccttaggcaaacagtaccactggcaaaacgccctgtgtaaataactgcataggtatgta 384
Query: 185 aatgaaatcagccattgctgttttcttctaagtcttttaaataaaagagtgaatattcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgaaatcagccattgctgttttcttctaagtcttttaaataaaagagtgaatattcaa 444
Query: 245 ataaagtaaatgccttcagacaccaggagtctttgctaagttacctccctttgcccagaa 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 ataaagtaaatgccttcagacaccaggagtctttgctgagttacctccctttgcccagaa 504
Query: 305 gaggacaaactccaactcaaatgctcctttctctacacaacacccaagtcagatcacaaa 364
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 gaggacaaactcccactcaaatgctcctttctctacacaacacccaggtcagatcacaaa 564
Query: 365 gaaaatattttcctctttaagacattttgtttaaataaatttaaattcctaaagagtccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaaatattttcctctttaagacattttgtttaaataaatttaaattcctaaagagtccc 624
Query: 425 ggtgagtttgaggttgctaaaatcct-gcagacagattttgggtagttccttggaagggg 483
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 625 ggtgagtttgaggttgctaaaa-ccttgcagacagattttgggtagttccttggaagggg 683
Query: 484 tcttccgttcctaggaaggaaagccgcaggtaaaagccagctctttgttaaccagtctgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcttccgttcctaggaaggaaagccgcaggtaaaagccagctctttgttaaccagtctgt 743
Query: 544 aaggaccctgagcatagagccatctgagctaatacttgaagattcacagcgtctgggcct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaggaccctgagcatagagccatctgagctaatacttgaagattcacagcgtctgggcct 803
Query: 604 cggcttagcataaaatattctaggagaggataaatatcagggggtagctggcacct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cggcttagcataaaatattctaggagaggataaatatcagggggtagctggcacct 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_b08.g1 MSMg01no534_b08.g1 CHROMAT_FILE:
MSMg01no534_b08.g1 PHD_FILE: MSMg01no534_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:27 2005
(661 letters)
>mm_chr4_99470276_99471336
Length = 1061
Score = 1031 bits (533), Expect = 0.0
Identities = 575/599 (95%), Gaps = 17/599 (2%)
Strand = Plus / Minus
Query: 1 ttttcatcccacaggaaggattgcattagagacataacggtgcaatagttggatttataa 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 582 ttttcatcccacaggaaggattgcattagagacataacagtgcaatagttggatttataa 523
Query: 61 aggtattttttaaaagattctgcttacaattttggcaactgcagatatataaaataaatg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 522 aggtattttttaaaagattctgtttacaattttggcaactgcagatatataaaataaatg 463
Query: 121 cctttgttcccccaaacaattttaactatgaaaaattttgacctatagtttctagaacaa 180
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 462 cctttgttcccccaaacaatgttaactatgaaacattttgacctatagtttctagaacaa 403
Query: 181 ataccaaggttacttttaaaggtgacactgctgtgggtgcattaaagaacacttgactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ataccaaggttacttttaaaggtgacactgctgtgggtgcattaaagaacacttgactat 343
Query: 241 agagatttatggaattgtttgaagacagcgtccaagctaaaattgtttcgagccttgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agagatttatggaattgtttgaagacagcgtccaagctaaaattgtttcgagccttgaga 283
Query: 301 ccttttctttatgctctgagttcatcccgtgtactcaacactcttgatttcagattcttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccttttctttatgctctgagttcatcccgtgtactcaacactcttgatttcagattcttg 223
Query: 361 cacctgtctcaattcttttctgtctcaatttttttctggaacagggttttgtgtttctca 420
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 222 cacctgtctcaatt----------------tttttctggaacagggttttgtgtttctca 179
Query: 421 agatggcttcatctgctcagtgtagctaaggatgtccttgaacttctgatccttttgcct 480
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 178 agatggcttcatctgctcagtgtagctaaggatgtccttgaacttctgaac-ttttgcct 120
Query: 481 tcacctcctgagtgctgagatttataggcattcaccatcgtgcccagattattcttccta 540
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 119 tcacctcctgattgctgagatttataggcattcaccatcgtgcccagattcttcttccta 60
Query: 541 gggattggaacccgggctctgtgcatgctaggcaagcactctgcctgctgaagctacat 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gggattggaacccgggctctgtgcatgctaggcaagcactctgcctgctgaagctacat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
