BAC Information

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BAC

Clone NameMSMg01-534O05
Chromosome4 (Build37)
Map Location 119,327,870 - 119,328,447
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a
Downstream geneGuca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534O05.T7 (MSMg01no534_o05.b1)MSMg01-534O05.TJ (MSMg01no534_o05.g1)
ACCAG602468AG602469
length780732
length of high quality
(start - end)
358 (42 - 399)578 (73 - 650)
definitionCHROMAT_FILE: MSMg01no534_o05.b1 PHD_FILE: MSMg01no534_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:32 2005CHROMAT_FILE: MSMg01no534_o05.g1 PHD_FILE: MSMg01no534_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATTTTCCGAACCCACGGTAGACAGAGAGAGAGCCAAGTCTCCAAAGTT
GTCCTCTCACTTGCTGCTAGACAGTGTCTTCTAGACAAGGGAGGGAAGCT
GAACTCATGAAATCTCAACAATATGGTCTTGTAACCAAGACCAGTTGAAA
AACAACACCAGCTGACATCCCAATATAAAAAGGAGGAAATCCCGTAGGCC
CCACCCCTAGATGAAGAACTATAGGCAACCAATGGTTGCTGGAAGAGGGG
GAATCAGTCTTCCTCAGAGAAAAGGCCCTGATAGATGATCCTGTCCTAAG
TGGTCAGTCTAAGAGCAACACTAAATGGACTCAGTAGGGTGTGTGTGTGT
GTGTGTGTGCGTGTGTGTGTGTGAGTGTTCTCGCATAATTAACACTTCGT
GCTCTTGTTGTCTGACTATCGGTCCTTTTTCCTTCCCTTCTATCTCCTCT
TCCCTCTCCTTTTTTTTACTCCCCGTATTCCCCCCTCCCTATATCCCCTA
AATATTTTGACTTCCGTTTTTTATCTTTCTTTTCGCTCTTTTCACTACAC
TTCCATTAGTGTATAATTTGTTTTCCCATTCTCTTCTTTTACTTGTTTAT
CACTTCCTTTTATTATTTCCCTTCTCCCCGCCCCTACTTTCATTCTTCGT
GTCCCTCCTATTTTTCTCTTTATTTTCCTCTCGCTTCTTTTCTTTTAATT
CTTGTCCTCTTCTCTTGCCTGTTACCATTG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGCTAGCATGCATGAAGTCCTACGCT
CAGTAGTCAATACCGCATAAACTGGCCATGGTGTGGATGGCTATAACCCC
AGTACCAGGAAGGTGGAGCAGGAAGATCAGAAAGTCATGGATGTAATGAG
TTAGAGGCTAGCCTGGGGTATATGAGACTCTATCTTAAAATCAGCAAACA
AATGACTATCTAGGTGACTTCACTGGCAGTTCCCTGAGTGGGCGGGGACA
CAGCCCCTGAAAAGGGTAAATGATAAATGTGCACAGATGATGTTTAGGTT
CAAGTCAGATTCCAGCAGTGGCATGGTGGCGCACAGCAGGGTAAGGGACA
CAACCAGGCTACCCGGTTCCCCTGGCAGAGCCCTGAGGCAGGAGCCAGGG
AGTGAGGAGGAGCAGAGTGGAGCAGTAGGGTCTTTCGGCTGTCTGTGTAC
TCAACTGGCACTTTGCACCCAGCCTTCCTCCCTCCTAGGTGCCCAGGTCC
AAGGCCAAGCAGCAAACCTGCCCTGTGGGAAATCCCATACTGGGAATTTC
CAGGACAAGTCCTGACTGGAGTAAAGGCCTCAACCCTGGGATCCACCTTC
CATGGCTCAGGCCACAACAGAGCAGCAGTCACAGCCTTGTGTCCTGTAAG
TACTCTGCTGGGGAGGAGACACCATCTGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_o05.g1 MSMg01no534_o05.g1 CHROMAT_FILE:
MSMg01no534_o05.g1 PHD_FILE: MSMg01no534_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:33 2005
         (578 letters)



>mm_chr4_119327670_119328647
          Length = 978

 Score = 1071 bits (554), Expect = 0.0
 Identities = 572/578 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctagcatgcatgaagtcctacgctcagtagtcaataccgcataaactggccatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctagcatgcatgaagtcctacgctcagtagtcaataccgcataaactggccatggt 260

                                                                       
Query: 61  gtggatggctataaccccagtaccaggaaggtggagcaggaagatcagaaagtcatggat 120
           || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gtagatagctataaccccagtaccaggaaggtggagcaggaggatcagaaagtcatggat 320

                                                                       
Query: 121 gtaatgagttagaggctagcctggggtatatgagactctatcttaaaatcagcaaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatgagttagaggctagcctggggtatatgagactctatcttaaaatcagcaaacaaa 380

                                                                       
Query: 181 tgactatctaggtgacttcactggcagttccctgagtgggcggggacacagcccctgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactatctaggtgacttcactggcagttccctgagtgggcggggacacagcccctgaaa 440

                                                                       
Query: 241 agggtaaatgataaatgtgcacagatgatgtttaggttcaagtcagattccagcagtggc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 agggtaaatgataaatgtgcacagatgatgtttaggctcaagtcagattccagcagtggc 500

                                                                       
Query: 301 atggtggcgcacagcagggtaagggacacaaccaggctacccggttcccctggcagagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 atggtggcgcacagcagggtaagggacacaaccaggctacccggttcccctggcagaacc 560

                                                                       
Query: 361 ctgaggcaggagccagggagtgaggaggagcagagtggagcagtagggtctttcggctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaggcaggagccagggagtgaggaggagcagagtggagcagtagggtctttcggctgt 620

                                                                       
Query: 421 ctgtgtactcaactggcactttgcacccagccttcctccctcctaggtgcccaggtccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgtactcaactggcactttgcacccagccttcctccctcctaggtgcccaggtccaa 680

                                                                       
Query: 481 ggccaagcagcaaacctgccctgtgggaaatcccatactgggaatttccaggacaagtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggccaagcagcaaacctgccctgtgggaaatcccatactgggaatttccaggacaagtcc 740

                                                 
Query: 541 tgactggagtaaaggcctcaaccctgggatccaccttc 578
           |||||||||||||||||||| |||||||||||||||||
Sbjct: 741 tgactggagtaaaggcctcagccctgggatccaccttc 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)