BAC Information

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BAC

Clone NameMSMg01-534P03
Chromosome4 (Build37)
Map Location 114,331,821 - 114,332,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242627, LOC100040625, A630098G03Rik, LOC666048
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P03.T7 (MSMg01no534_p03.b1)MSMg01-534P03.TJ (MSMg01no534_p03.g1)
ACCAG602511AG602512
length721712
length of high quality
(start - end)
180 (64 - 243)192 (78 - 269)
definitionCHROMAT_FILE: MSMg01no534_p03.b1 PHD_FILE: MSMg01no534_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005CHROMAT_FILE: MSMg01no534_p03.g1 PHD_FILE: MSMg01no534_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATTATTAGTGGTTGCTAATCTACTCACTATTTCCGAGAGGATCCGCGG
AATTCACTGTTTCACCTGGTGTGTTAGCCTGATGCTTTGTCTATAGGAAA
GTTATTAATTAGTTATCTAATTTTTGATGGAGATATGCCTATTTAAATTG
TCTCTTTCTTCTTGTTTGAATTTCAGCAGACTGTCTTTTCAAGAAACTGG
GCCAAGTATTTATCAAGTATTGATAGGTTATCTCAGTATTGGAGCACAGA
GTTGTTTGTTATATTCTATAGTTGTAATTTTAATGTTTGTGGGTCTGCAA
CATGTCTCCTACTTTATTTCTGGTATTAGCATCTTACCCCTAGTTACTGG
TTATTTGGTGAGGAGGGTCACTTTTTGCTTTGTATGATGTTTCTCAATTC
CTCTGGCCTATAACTGCTTTATATCTCTAATAACCTTCCCCACTTTATTA
CAACCAATAATACCCCCTTGTAACTGCTGAATTTTTCCTGTAATCACAAG
TGTCTAATCTACCCCCAGGTTACAAATCATTACTGCTTTTCATCTTACAA
TGTCTGAAGGGATTTTCGGAATCTTCTAAGTCCGTACTTAGTCCTGTGTT
TTTCGACGATGATTGAGTTAAATTATTCCAATATTTCCGGGAGCCTTATG
ATTACAATTACTTTTTGGTATTCTCGTTAAAAACTTGTACTCTCTGGTCT
CTATGAATGATCCTGGACTTT
CCATTTCTAGTGGGTGGCCTGGGGGCCGCCTGTCGTACAAATTTAGGTGA
ACTATAGATTGCCCCGCGGATTTCAGACGTGGACTAAGAGTGAAGCCACA
GGAAGGAGGCATCCACTCAAGAGACATATGTAGACGCGGATGCATGCTTG
TCTCGAGAGGAGCAGGCATGCTCCTGTGTTCCCACCACCTAGCGTTAGCA
ATTAGGAGCAGCTCCACAATTTTGTGGTGTCTATCCAAAGACTCTCCTTG
CCACATTTCCCTTCCTGGAGGTGAAATCTGTTGGGGCTTTCACAGCGAGG
TGTGTGTCTGGCTGGCGTGGACATGCCGAGGAGCCTGTTTCTGGAGGCAG
AGCTGGGTCAGCAACTTCCATGCTTGGCAGATGGTTTCCTGATGCTTGTA
CCCTCAGCCGCTGCCTTGGTGGTCCACTTCTGCAGCCCAGCTTCGGGAGC
TGCTCCCGAAGATGCAGCCCATAGTCTGTTTCTTCAGCTTTCCAAATATT
TCTGTAAGCTATTCGATACCATTACTACATTAATTTCTGCTTGAACTACC
CAGAGTGAATTCTGCCTTCTGTAATTAGAACCTAAGGAATCCCCAATTTG
CCCTGTACTTCCATTTGGTTTAACATGGTCCATAACAGCCCACCCTGCAA
CTATTTCCCCTCATCCTTGTGCGCTCCATCCAGTGTGCCTCCAGTCAGCC
CAACTCAGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p03.g1 MSMg01no534_p03.g1 CHROMAT_FILE:
MSMg01no534_p03.g1 PHD_FILE: MSMg01no534_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:37 2005
         (192 letters)



>mm_chr4_114331621_114332212
          Length = 592

 Score =  371 bits (192), Expect = e-107
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtggactaagagtgaagccacaggaaggaggcatccactcaagagacatatgtagacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cgtggactaagagtgaagccacaggaaggaggcatccactcaagagacatatgtagacgc 333

                                                                       
Query: 61  ggatgcatgcttgtctcgagaggagcaggcatgctcctgtgttcccaccacctagcgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggatgcatgcttgtctcgagaggagcaggcatgctcctgtgttcccaccacctagcgtta 273

                                                                       
Query: 121 gcaattaggagcagctccacaattttgtggtgtctatccaaagactctccttgccacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gcaattaggagcagctccacaattttgtggtgtctatccaaagactctccttgccacatt 213

                       
Query: 181 tcccttcctgga 192
           ||||||||||||
Sbjct: 212 tcccttcctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)