BAC Information

Click to search

BAC

Clone NameMSMg01-535H15
Chromosome4 (Build37)
Map Location 139,368,740 - 139,528,049
singlet/doubletdoublet
Overlap genePax7, Gm1667, Klhdc7a
Upstream genePla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
Downstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535H15.T7 (MSMg01no535_h15.b1)MSMg01-535H15.TJ (MSMg01no535_h15.g1)
ACCAG602917AG602918
length763745
length of high quality
(start - end)		666 (49 - 714)565 (84 - 648)
definitionCHROMAT_FILE: MSMg01no535_h15.b1 PHD_FILE: MSMg01no535_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:18 2005CHROMAT_FILE: MSMg01no535_h15.g1 PHD_FILE: MSMg01no535_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,527,686 - 139,528,049)(139,368,740 - 139,369,304)
sequence
NNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACATGTACATAAGTGTGAGAGTGTGGTTGTGTGAGGGTGCAT
GAGTGTGTCAGAGTACATCAGTAGTAAGCGTGATGTGAGTGTGTAAGATT
GTGTAAGTGTGAATGACTGTGTGATTTTATGTAGTTCTGTTGAGTGTGCT
TGTTGGAGAGACTGCATATATTTGAGTGTGAGAACGTGTGTCACTGTGTA
TGTATAAATTATGTCACTGTGTGTGTGTAAGTGTATGAGACTATGTGTGT
ATACATTGAAAAGAGTGTGTATGAATGTGTGTTGATGTGAATTTGTGTGT
GAATTTGAGCATATAAAATTATCTGTATGTCACTGTGGCCGTGTGTTGGC
TTTTGACTGTGTGTGTGTGTGTGTGTGTGATCTTATGCACCTGTGAAAAT
TTCGTGTGTTAGTGTGACTATGATCACATGTGAGCCCCTGTGTGAGTCAG
AGAGTCTGAGAGTGGGATGTGTGAGTCTGTATGAGTGTGATTATAAGTGT
GTGATTGTGTTTTGGTGGTGTGTGTGCATGTGTGTCAATGTGAATATGTG
TATATGAATATGCATGTATTTGAGGGTATTTACCTGAATATGGATATGAA
TTTGTGAGTGTGTATGAAGGTGAGTGTGTGTGTGTACACGTACACTCTCA
CACATGTGCTAGTGTGAATGTTTAACGTTTGTGTGACAAATGTTTGTATG
TTTGACTTTTTAA

TATTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACCTCCTGGTGTTAT
CTGAAGGACCTGAAGAATTCACTCCTGTAAAGTCGGAGTAGGTGGTAGAT
GTTTTTATTGTTTTGTTTTCTTAAGACAGGGTCAGGGTCTCACTATATAT
AATGTAGGCAGGTCTCCAACCTGTGTGATCCCCCAGCCTCAGTCTCCACA
ATGCTGGGTATGGGGTTACAGATGGGATCATCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTTGTTTGCTTGCTTGCTTGGTATCTTCAATAC
ATAGCTGCCTCCCTCCTCTCAAGGTTCAGGTCAAACCACTTCTGCCCTGC
AACTTTCTCCGAAAAGCACCTACCGCCTCCCCACCCCCACCCTCTGCTTC
CCACCCTGGTTTTCTTCCCACTCCCAGACCCATCCTGGCTTCCTGAAAGT
CCCCCTAGTTTGTGGACCAGCCCACTGTCAGCTTCCCCAGCAGGTAAGCC
TGCAGTGGGGCCCTGTCCTTCCAAACCCATTCTCTCAGCCCTGACCCACC
CACATCTTTATCCCTTGTATCTCTAGCCAGAATGAAACGATAGCTCCGGA
ACTCCACCATCTCAGGGGAAACCATGAGGAAGGGCAGAAAGATAACTGAT
TGACAGCTGGTGGTGGGCTCTTCTCTCAGTACACACCGCTGTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_h15.b1 MSMg01no535_h15.b1 CHROMAT_FILE:
MSMg01no535_h15.b1 PHD_FILE: MSMg01no535_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:18 2005
         (666 letters)



>mm_chr4_139527686_139528751
          Length = 1066

 Score =  696 bits (360), Expect = 0.0
 Identities = 363/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatgtacataagtgtgagagtgtggttgtgtgagggtgcatgagtgtgtcaga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaattcacatgtacagaagtgtgagagtgtggttgtgtgagggtgcatgagtgtgtcaga 305

                                                                       
Query: 65  gtacatcagtagtaagcgtgatgtgagtgtgtaagattgtgtaagtgtgaatgactgtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtacatcagtagtaagcgtgatgtgagtgtgtaagattgtgtaagtgtgaatgactgtgt 245

                                                                       
Query: 125 gattttatgtagttctgttgagtgtgcttgttggagagactgcatatatttgagtgtgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gattttatgtagttctgttgagtgtgcttgttggagagactgcatatatttgagtgtgag 185

                                                                       
Query: 185 aacgtgtgtcactgtgtatgtataaattatgtcactgtgtgtgtgtaagtgtatgagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aacgtgtgtcactgtgtatgtataaattatgtcactgtgtgtgtgtaagtgtatgagact 125

                                                                       
Query: 245 atgtgtgtatacattgaaaagagtgtgtatgaatgtgtgttgatgtgaatttgtgtgtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 atgtgtgtatacattgaaaagagtgtgtatgaatgtgtgttgatgtgaatttgtgtgtga 65

                                                                       
Query: 305 atttgagcatataaaattatctgtatgtcactgtggccgtgtgttggcttttgactgtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  atttgagcatataaaattatctgtatgtcactgtggccgtgtgttggcttttgactgtgt 5

               
Query: 365 gtgt 368
           ||||
Sbjct: 4   gtgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_h15.g1 MSMg01no535_h15.g1 CHROMAT_FILE:
MSMg01no535_h15.g1 PHD_FILE: MSMg01no535_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:18 2005
         (565 letters)



>mm_chr4_139368540_139369504
          Length = 965

 Score = 1093 bits (565), Expect = 0.0
 Identities = 565/565 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacctcctggtgttatctgaaggacctgaagaattcactcctgtaaagtcggagtaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacctcctggtgttatctgaaggacctgaagaattcactcctgtaaagtcggagtaggt 260

                                                                       
Query: 61  ggtagatgtttttattgttttgttttcttaagacagggtcagggtctcactatatataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagatgtttttattgttttgttttcttaagacagggtcagggtctcactatatataat 320

                                                                       
Query: 121 gtaggcaggtctccaacctgtgtgatcccccagcctcagtctccacaatgctgggtatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggcaggtctccaacctgtgtgatcccccagcctcagtctccacaatgctgggtatgg 380

                                                                       
Query: 181 ggttacagatgggatcatcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttacagatgggatcatcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgtt 440

                                                                       
Query: 241 tgcttgcttgcttggtatcttcaatacatagctgcctccctcctctcaaggttcaggtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttgcttgcttggtatcttcaatacatagctgcctccctcctctcaaggttcaggtca 500

                                                                       
Query: 301 aaccacttctgccctgcaactttctccgaaaagcacctaccgcctccccacccccaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccacttctgccctgcaactttctccgaaaagcacctaccgcctccccacccccaccct 560

                                                                       
Query: 361 ctgcttcccaccctggttttcttcccactcccagacccatcctggcttcctgaaagtccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcttcccaccctggttttcttcccactcccagacccatcctggcttcctgaaagtccc 620

                                                                       
Query: 421 cctagtttgtggaccagcccactgtcagcttccccagcaggtaagcctgcagtggggccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctagtttgtggaccagcccactgtcagcttccccagcaggtaagcctgcagtggggccc 680

                                                                       
Query: 481 tgtccttccaaacccattctctcagccctgacccacccacatctttatcccttgtatctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtccttccaaacccattctctcagccctgacccacccacatctttatcccttgtatctc 740

                                    
Query: 541 tagccagaatgaaacgatagctccg 565
           |||||||||||||||||||||||||
Sbjct: 741 tagccagaatgaaacgatagctccg 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |